Factsheet for VIT_03s0038g04350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g13090.t01	Wine grape	cytosol	95.74	95.98
Solyc01g109940.2.1	Tomato	nucleus	94.99	95.23
PGSC0003DMT400079514	Potato	cytosol	94.74	94.97
GSMUA_AchrUn_...	Banana	cytosol	94.99	94.51
TraesCS6D01G149500.1	Wheat	cytosol	83.96	93.06
TraesCS6B01G188500.1	Wheat	cytosol	92.48	92.25
TraesCS6A01G162700.2	Wheat	cytosol, golgi	92.48	92.25
EES06471	Sorghum	cytosol	92.23	92.0
Zm00001d053649_P002	Maize	cytosol, mitochondrion	92.23	92.0
Zm00001d015788_P001	Maize	plasma membrane	92.23	92.0
GSMUA_Achr4P03720_001	Banana	cytosol	91.73	91.96
GSMUA_Achr7P17620_001	Banana	cytosol	94.49	91.95
Os02t0199900-01	Rice	nucleus, plasma membrane	91.98	91.75
TraesCS7A01G378600.1	Wheat	cytosol	91.98	91.75
TraesCS7D01G375500.1	Wheat	cytosol	91.73	91.5
TraesCS7B01G280400.1	Wheat	cytosol, unclear	91.73	91.5
EER88627	Sorghum	cytosol	90.23	90.45
Os06t0607800-01	Rice	nucleus	90.73	90.27
Zm00001d046539_P002	Maize	cytosol, mitochondrion	89.72	89.95
HORVU6Hr1G032570.5	Barley	cytosol	89.72	87.53
Solyc10g054040.1.1	Tomato	cytosol, unclear	85.46	85.46
HORVU7Hr1G090380.3	Barley	cytosol	91.73	83.94
TraesCS7D01G532000.1	Wheat	cytosol	76.44	76.63
HORVU7Hr1G119300.13	Barley	cytosol	76.44	75.87
TraesCS7A01G545700.1	Wheat	cytosol	75.44	75.63
TraesCS7B01G468900.1	Wheat	cytosol	75.44	75.63
KRH51488	Soybean	mitochondrion	69.42	65.48
VIT_04s0008g04690.t01	Wine grape	cytosol	43.61	41.43
VIT_09s0002g05800.t01	Wine grape	cytosol	43.11	41.25
VIT_09s0002g00170.t01	Wine grape	cytosol	41.85	39.2
VIT_14s0060g02260.t01	Wine grape	cytosol	39.6	39.01
VIT_05s0020g01180.t01	Wine grape	cytosol	40.85	38.53
VIT_07s0005g05160.t01	Wine grape	cytosol	42.61	38.2
VIT_11s0016g00230.t01	Wine grape	cytosol	40.6	38.12
VIT_06s0004g08220.t01	Wine grape	cytosol	38.85	37.08
VIT_06s0061g00340.t01	Wine grape	cytosol	34.09	17.78
VIT_08s0040g01480.t01	Wine grape	cytosol	34.34	17.0
VIT_17s0000g08890.t01	Wine grape	cytosol	34.34	16.83
VIT_01s0010g02600.t01	Wine grape	cytosol	30.33	14.67
VIT_07s0104g01610.t01	Wine grape	cytosol	28.07	11.94
VIT_08s0040g00910.t01	Wine grape	cytosol	31.58	11.9
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.57	9.7

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100243563	wikigene:100243563	MapMan:19.2.6.2.1.4	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI37694	ProteinID:CBI37694.3
ncoils:Coil	UniProt:D7U4M5	EMBL:FN596508	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	EntrezGene:LOC100243563	wikigene:LOC100243563
InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF58	SMART:SM00382
SUPFAM:SSF52540	TIGR:TC56284	TIGR:TC61811	TIGRFAMs:TIGR01242	UniParc:UPI00015C8FAF	ArrayExpress:VIT_03s0038g04350
EnsemblPlantsGene:VIT_03s0038g04350	EnsemblPlants:VIT_03s0038g04350.t01	unigene:Vvi.5748	RefSeq:XP_002283544	RefSeq:XP_002283544.1	SEG:seg

Description

No Description!

Coordinates

chr3:+:3158675..3164971

Molecular Weight (calculated)

44658.1 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.361

Length

399 amino acids

Sequence
(BLAST)

001: MASEAEDAVR RRTTTTDYRK KLLQHKELES RVRSVRENLR AAKKEYAKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTA
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNVSYAA VGGLSDQIRE LRESIELPLM NPELFIRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFGYARD HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHAAGIAKHG EIDYEAVVKL AEGFNGADLR NVCTEAGMSA IRAERDYVIH EDFMKAVRKL NEAKKLESSA HYNADFGKD

Best Arabidopsis Sequence Match ( AT1G45000.1 )
(BLAST)

001: MSDGDDAARR RTAAVTDYRK KLLHHKELES RVRTARENLR AAKKEFNKTE DDLKSLQSVG QIIGEVLRPL DNERLIVKAS SGPRYVVGCR SKVDKEKLTS
101: GTRVVLDMTT LTIMRALPRE VDPVVYNMLH EDPGNISYSA VGGLGDQIRE LRESIELPLM NPELFLRVGI KPPKGVLLYG PPGTGKTLLA RAIASNIDAN
201: FLKVVSSAII DKYIGESARL IREMFNYARE HQPCIIFMDE IDAIGGRRFS EGTSADREIQ RTLMELLNQL DGFDQLGKVK MIMATNRPDV LDPALLRPGR
301: LDRKIEIPLP NEQSRMEILK IHASGIAKHG EIDYEAIVKL GEGFNGADLR NICTEAGMFA IRAERDYVIH EDFMKAVRKL SEAKKLESSS HYNADFGKE

Arabidopsis Description

RPT4B26S protease regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.