Factsheet for VIT_07s0005g05160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0125g00350.t01
VIT_01s0011g03380.t01
VIT_01s0026g00990.t01
VIT_01s0146g00300.t01
VIT_02s0012g02660.t01
VIT_02s0025g02010.t01
VIT_03s0017g00150.t01
VIT_06s0004g03190.t01
VIT_06s0004g08220.t01
VIT_07s0005g03000.t01
VIT_07s0031g01970.t01
VIT_07s0151g00690.t01
VIT_08s0058g00020.t01
VIT_09s0002g00350.t01
VIT_09s0002g00980.t01
VIT_09s0002g05800.t01
VIT_09s0018g01940.t01
VIT_10s0042g00070.t01
VIT_11s0016g00230.t01
VIT_12s0028g03130.t01
VIT_12s0034g00940.t01
VIT_12s0035g00780.t01
VIT_12s0057g00690.t01
VIT_15s0048g00130.t01
VIT_15s0048g00900.t01
VIT_17s0000g07580.t01
VIT_17s0000g10250.t01
VIT_18s0001g01120.t01
VIT_18s0001g10820.t01
VIT_18s0001g12760.t01
VIT_18s0001g13090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29040.1	VIT_00s0125g00350.t01	AT1G04810.1	14623884
AT4G29040.1	VIT_18s0001g01120.t01	AT1G20200.1	14623884
AT4G29040.1	VIT_12s0034g00940.t01	AT1G29150.1	14623884
AT4G29040.1	VIT_15s0048g00130.t01	AT1G29150.1	14623884
AT4G29040.1	VIT_18s0001g13090.t01	AT1G45000.1	14623884
AT4G29040.1	VIT_11s0016g00230.t01	AT1G53750.1	14623884
AT4G29040.1	VIT_09s0002g00350.t01	AT1G53850.1	14623884
AT4G29040.1	VIT_06s0004g03190.t01	AT1G56450.1	14623884
AT4G29040.1	VIT_01s0026g00990.t01	AT1G59900.1	24846764
AT4G29040.1	VIT_09s0018g01940.t01	AT1G59900.1	24846764
AT4G29040.1	VIT_02s0025g02010.t01	AT1G64520.1	14623884
AT4G29040.1	VIT_18s0001g01120.t01	AT1G75990.1	14623884
AT4G29040.1	VIT_09s0002g00980.t01	AT2G05840.1	14623884
AT4G29040.1	VIT_12s0028g03130.t01	AT2G20580.1	14623884
AT4G29040.1	VIT_00s0125g00350.t01	AT2G32730.1	14623884
AT4G29040.1	VIT_09s0002g00350.t01	AT3G14290.1	14623884
AT4G29040.1	VIT_10s0042g00070.t01	AT3G22110.1	14623884
AT4G29040.1	VIT_07s0151g00690.t01	AT3G22630.1	14623884
AT4G29040.1	VIT_01s0011g03380.t01	AT3G25860.1	24846764
AT4G29040.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946
AT4G29040.1	VIT_01s0146g00300.t01	AT3G60820.1	14623884
AT4G29040.1	VIT_15s0048g00900.t01	AT3G60820.1	14623884
AT4G29040.1	VIT_17s0000g10250.t01	AT4G24820.1	14623884
AT4G29040.1	VIT_12s0028g03130.t01	AT4G28470.1	14623884
AT4G29040.1	VIT_03s0017g00150.t01	AT5G05780.1	14623884
AT4G29040.1	VIT_07s0005g03000.t01	AT5G05780.1	14623884
AT4G29040.1	VIT_09s0002g05800.t01	AT5G19990.1	14623884
AT4G29040.1	VIT_09s0002g05800.t01	AT5G20000.1	14623884
AT4G29040.1	VIT_18s0001g10820.t01	AT5G23540.1	14623884
AT4G29040.1	VIT_09s0002g00980.t01	AT5G35590.1	14623884
AT4G29040.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946
AT4G29040.1	VIT_18s0001g12760.t01	AT5G42790.1	14623884
AT4G29040.1	VIT_02s0012g02660.t01	AT5G45620.1	14623884
AT4G29040.1	VIT_06s0004g08220.t01	AT5G58290.1	14623884
AT4G29040.1	VIT_07s0031g01970.t01	AT5G64760.1	14623884
AT4G29040.1	VIT_08s0058g00020.t01	AT5G64760.1	14623884
AT4G29040.1	VIT_12s0035g00780.t01	AT5G64760.1	14623884

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67524	Soybean	nucleus	98.43	98.21
KRG95799	Soybean	cytosol, nucleus	98.2	97.98
PGSC0003DMT400040872	Potato	cytosol	97.3	97.52
KRH32292	Soybean	cytosol, nucleus	97.08	97.52
Solyc06g083620.2.1	Tomato	nucleus, plastid	97.08	97.3
KRH19693	Soybean	cytosol	96.85	97.29
PGSC0003DMT400051744	Potato	cytosol	96.85	97.07
AT4G29040.1	Thale cress	cytosol	96.18	96.61
AT2G20140.1	Thale cress	cytosol	96.18	96.61
CDY35245	Canola	cytosol	95.06	95.49
Bra011079.1-P	Field mustard	cytosol	95.06	95.49
CDX92914	Canola	cytosol, extracellular	95.06	95.49
GSMUA_Achr4P05850_001	Banana	cytosol	90.79	95.28
CDY14224	Canola	cytosol	95.28	95.28
Bra010342.1-P	Field mustard	cytosol	95.28	95.28
CDX97472	Canola	cytosol	95.28	95.28
CDY06847	Canola	cytosol	94.83	95.26
GSMUA_Achr4P05840_001	Banana	cytosol	89.44	94.54
Os03t0298400-01	Rice	plasma membrane	93.48	92.44
Os07t0691800-01	Rice	cytosol, nucleus, plasma membrane, plastid	92.58	91.96
EER99961	Sorghum	cytosol	91.91	91.5
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	91.69	91.28
Zm00001d028801_P001	Maize	cytosol, extracellular	91.46	91.26
HORVU4Hr1G055060.1	Barley	cytosol	92.13	91.11
TraesCS4D01G190600.1	Wheat	cytosol, golgi	92.13	91.11
TraesCS2B01G105700.1	Wheat	cytosol	91.91	91.09
TraesCS2D01G087900.1	Wheat	cytosol, golgi	91.91	91.09
TraesCS4A01G115000.1	Wheat	cytosol	91.91	90.89
TraesCS4B01G189200.1	Wheat	cytosol	91.91	90.89
TraesCS2A01G090000.1	Wheat	cytosol	91.69	90.87
Zm00001d007215_P001	Maize	cytosol	91.69	87.93
HORVU2Hr1G014770.2	Barley	cytosol, plastid	86.07	86.85
CDY59958	Canola	cytosol	62.47	76.37
Bra024165.1-P	Field mustard	cytosol	55.06	75.85
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	42.25	74.9
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	42.02	74.5
VIT_06s0004g08220.t01	Wine grape	cytosol	42.02	44.74
VIT_14s0060g02260.t01	Wine grape	cytosol	39.78	43.7
VIT_03s0038g04350.t01	Wine grape	cytosol	38.2	42.61
VIT_18s0001g13090.t01	Wine grape	cytosol	37.98	42.46
VIT_05s0020g01180.t01	Wine grape	cytosol	40.22	42.32
VIT_04s0008g04690.t01	Wine grape	cytosol	38.43	40.71
VIT_09s0002g05800.t01	Wine grape	cytosol	37.98	40.53
VIT_09s0002g00170.t01	Wine grape	cytosol	37.08	38.73
VIT_11s0016g00230.t01	Wine grape	cytosol	36.18	37.88
VIT_06s0061g00340.t01	Wine grape	cytosol	27.87	16.21
VIT_08s0040g01480.t01	Wine grape	cytosol	28.76	15.88
VIT_17s0000g08890.t01	Wine grape	cytosol	28.76	15.72
VIT_01s0010g02600.t01	Wine grape	cytosol	28.09	15.15
VIT_07s0104g01610.t01	Wine grape	cytosol	27.19	12.9
VIT_08s0040g00910.t01	Wine grape	cytosol	28.09	11.8
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.17	9.88

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100244194	wikigene:100244194	MapMan:19.2.6.2.1.2	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like
Gene3D:3.40.50.300	UniProt:A5BEF3	InterPro:AAA+_ATPase	EMBL:AM456586	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ProteinID:CAN78907	ProteinID:CAN78907.1	ProteinID:CCB60223	ProteinID:CCB60223.1	EMBL:FN596502	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
EntrezGene:LOC100244194	wikigene:LOC100244194	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	PANTHER:PTHR23073
PANTHER:PTHR23073:SF61	SMART:SM00382	SUPFAM:SSF52540	TIGR:TC52470	TIGR:TC61958	TIGRFAMs:TIGR01242
UniParc:UPI00015243CF	ArrayExpress:VIT_07s0005g05160	EnsemblPlantsGene:VIT_07s0005g05160	EnsemblPlants:VIT_07s0005g05160.t01	unigene:Vvi.6904	RefSeq:XP_002263334
RefSeq:XP_002263334.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:9089927..9099984

Molecular Weight (calculated)

49588.0 Da

IEP (calculated)

6.075

GRAVY (calculated)

-0.428

Length

445 amino acids

Sequence
(BLAST)

001: MGQGASGGLN RQGLPGDRKN DGDKKEKKFE PAAPPARVGR KQRKQKGPEA AARLPTVTPL SKCKLRLLKL ERIKDYLLME EEFVSNQERL KPQEEKTEED
101: RSKVDDLRGS PMSVGNLEEL IDENHAIVSS SVGPEYYVGI LSFVDKDQLE PGCAILMHNK VLSVVGLLQD EVDPMVSVMK VEKAPLESYA DIGGLDAQIQ
201: EIKEAVELPL THPELYEDIG IKPPKGVILY GEPGTGKTLL AKAVANSTSA TFLRVVGSEL IQKYLGDGPK LVRELFRVAD DLSPSIVFID EIDAVGTKRY
301: DAHSGGEREI QRTMLELLNQ LDGFDSRGDV KVILATNRIE SLDPALLRPG RIDRKIEFPL PDIKTRRRIF QIHTSRMTLA DDVNLEEFVM TKDEFSGADI
401: KAICTEAGLL ALRERRMKVT HVDFKKAKEK VMFKKKEGVP EGLYM

Best Arabidopsis Sequence Match ( AT4G29040.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.