Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 99.78 | 99.78 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 99.78 | 99.78 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 97.77 | 97.99 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 96.44 | 96.87 |
| EER99961 | Sorghum | cytosol | 96.44 | 96.87 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 95.99 | 95.78 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 89.53 | 94.81 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 87.75 | 93.59 |
| Zm00001d007215_P001 | Maize | cytosol | 96.21 | 93.1 |
| KRG95799 | Soybean | cytosol, nucleus | 91.98 | 92.6 |
| KRH67524 | Soybean | nucleus | 91.76 | 92.38 |
| AT4G29040.1 | Thale cress | cytosol | 91.09 | 92.33 |
| KRH32292 | Soybean | cytosol, nucleus | 91.09 | 92.33 |
| KRH19693 | Soybean | cytosol | 91.09 | 92.33 |
| CDY35245 | Canola | cytosol | 90.87 | 92.1 |
| Bra011079.1-P | Field mustard | cytosol | 90.87 | 92.1 |
| CDX97472 | Canola | cytosol | 91.09 | 91.91 |
| PGSC0003DMT400040872 | Potato | cytosol | 90.87 | 91.89 |
| CDY06847 | Canola | cytosol | 90.65 | 91.87 |
| Bra010342.1-P | Field mustard | cytosol | 90.87 | 91.69 |
| CDY14224 | Canola | cytosol | 90.87 | 91.69 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 90.87 | 91.69 |
| AT2G20140.1 | Thale cress | cytosol | 90.42 | 91.65 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 90.42 | 91.44 |
| CDX92914 | Canola | cytosol, extracellular | 90.2 | 91.42 |
| PGSC0003DMT400051744 | Potato | cytosol | 89.98 | 90.99 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 45.43 | 81.27 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 44.99 | 80.48 |
| CDY59958 | Canola | cytosol | 61.92 | 76.37 |
| Bra024165.1-P | Field mustard | cytosol | 54.79 | 76.16 |
| TraesCS2A01G086400.1 | Wheat | cytosol | 42.32 | 45.78 |
| TraesCS2A01G475900.1 | Wheat | cytosol | 42.32 | 44.5 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 40.31 | 41.71 |
| TraesCS6A01G177600.1 | Wheat | cytosol | 38.53 | 41.39 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 38.98 | 41.37 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 36.53 | 41.0 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 36.53 | 41.0 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 35.19 | 39.7 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 36.53 | 38.5 |
| TraesCS2A01G471400.1 | Wheat | cytosol | 37.86 | 37.28 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 27.84 | 22.05 |
| TraesCS3A01G450800.1 | Wheat | mitochondrion | 27.17 | 16.35 |
| TraesCS7A01G025800.1 | Wheat | mitochondrion | 28.51 | 16.31 |
| TraesCS4A01G463300.1 | Wheat | mitochondrion | 28.51 | 16.31 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 18.71 | 15.76 |
| TraesCS1A01G190300.1 | Wheat | cytosol | 27.84 | 15.47 |
| TraesCS4A01G035700.1 | Wheat | plastid | 27.84 | 15.38 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 26.95 | 15.34 |
| TraesCS4A01G035500.1 | Wheat | golgi, nucleus | 27.84 | 15.28 |
| TraesCS1A01G222100.1 | Wheat | cytosol | 27.17 | 15.25 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 22.72 | 14.66 |
| TraesCS2A01G060000.1 | Wheat | cytosol | 27.84 | 14.47 |
| TraesCS2A01G457600.3 | Wheat | mitochondrion | 25.84 | 12.43 |
| TraesCS4A01G204700.1 | Wheat | cytosol, plastid | 27.84 | 12.43 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 16.48 | 12.4 |
| TraesCS1A01G071300.1 | Wheat | cytosol, plastid | 27.62 | 12.34 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 23.83 | 9.82 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 22.49 | 9.39 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | InterPro:26S_subunit_4 | Gene3D:3.40.50.300 |
| InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0036402 | InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 |
| PANTHER:PTHR23073:SF42 | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS2A01G090000 | EnsemblPlants:TraesCS2A01G090000.1 |
| TIGR:cd00009 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:43133651..43137076
Molecular Weight (calculated)
49636.0 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.414
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGTPGGMG KQGGAPGDRG KPGGDGDKKD KKFEPPAAPS RVGRKQRRQK GPEAAARLPG VAPLSKCRLR LLKLDRVKDY LLMEEEFVAA QERLRPTEEK
101: TEEDRSKVDD LRGTPMSVGS LEEIIDESHA IVSSSVGPEY YVSILSFVDK DQLEPGCSIL MHNKVLSVVG ILQDEVDPMV SVMKVEKAPL ESYADIGGLD
201: AQIQEIKEAV ELPLTHPELY EDIGIRPPKG VILYGEPGTG KTLLAKAVAN STSATFLRVV GSELIQKYLG DGPKLVRELF RVADELSPSI VFIDEIDAVG
301: TKRYDAHSGG EREIQRTMLE LLNQLDGFDS RGDVKVILAT NRIESLDPAL LRPGRIDRKI EFPLPDIKTR RRIFQIHTAK MTLSDDVNLE EFVMTKDEFS
401: GADIKAICTE SGLLALRERR MKVTHADFKK AKEKVMFKKK EGVPEGLYM
101: TEEDRSKVDD LRGTPMSVGS LEEIIDESHA IVSSSVGPEY YVSILSFVDK DQLEPGCSIL MHNKVLSVVG ILQDEVDPMV SVMKVEKAPL ESYADIGGLD
201: AQIQEIKEAV ELPLTHPELY EDIGIRPPKG VILYGEPGTG KTLLAKAVAN STSATFLRVV GSELIQKYLG DGPKLVRELF RVADELSPSI VFIDEIDAVG
301: TKRYDAHSGG EREIQRTMLE LLNQLDGFDS RGDVKVILAT NRIESLDPAL LRPGRIDRKI EFPLPDIKTR RRIFQIHTAK MTLSDDVNLE EFVMTKDEFS
401: GADIKAICTE SGLLALRERR MKVTHADFKK AKEKVMFKKK EGVPEGLYM
001: MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA
Arabidopsis Description
RPT5B26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.