Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G284800.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5A01G285600.1 | Wheat | plastid | 100.0 | 100.0 |
| OQU89746 | Sorghum | cytosol | 79.19 | 94.59 |
| Zm00001d006085_P002 | Maize | extracellular | 94.12 | 94.12 |
| Os09t0505600-01 | Rice | plastid | 94.12 | 94.12 |
| Zm00001d021051_P002 | Maize | mitochondrion | 93.67 | 93.67 |
| Zm00001d011021_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 32.58 | 87.8 |
| HORVU5Hr1G076130.2 | Barley | plastid | 100.0 | 85.66 |
| GSMUA_Achr11P... | Banana | cytosol | 84.62 | 84.62 |
| GSMUA_Achr2P00960_001 | Banana | plasma membrane | 84.62 | 84.62 |
| GSMUA_Achr5P18150_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 55.2 | 81.33 |
| KRG99348 | Soybean | nucleus | 81.45 | 80.72 |
| VIT_15s0048g00900.t01 | Wine grape | cytosol | 80.54 | 79.82 |
| KRH45659 | Soybean | endoplasmic reticulum, nucleus | 80.54 | 79.82 |
| PGSC0003DMT400009060 | Potato | cytosol | 79.64 | 78.92 |
| Solyc02g084920.2.1 | Tomato | plastid | 79.19 | 78.48 |
| PGSC0003DMT400058139 | Potato | cytosol | 78.73 | 78.03 |
| Bra003428.1-P | Field mustard | cytosol | 76.47 | 75.78 |
| CDY52345 | Canola | cytosol | 76.47 | 75.78 |
| Bra007565.1-P | Field mustard | cytosol | 76.47 | 75.78 |
| CDX71775 | Canola | cytosol | 76.47 | 75.78 |
| CDX67842 | Canola | cytosol | 76.47 | 75.78 |
| CDY56729 | Canola | cytosol | 76.02 | 75.34 |
| CDX89080 | Canola | cytosol | 75.57 | 74.89 |
| CDX71344 | Canola | cytosol | 75.57 | 74.89 |
| Bra014468.1-P | Field mustard | cytosol | 75.11 | 74.44 |
| AT3G60820.1 | Thale cress | cytosol | 74.21 | 73.54 |
| Zm00001d043281_P001 | Maize | cytosol | 33.03 | 67.59 |
| Zm00001d018456_P001 | Maize | cytosol | 33.03 | 67.59 |
| GSMUA_AchrUn_... | Banana | extracellular | 30.32 | 64.42 |
| CDX95297 | Canola | cytosol | 33.03 | 53.28 |
| VIT_01s0146g00300.t01 | Wine grape | plastid | 45.25 | 52.08 |
| CDY46344 | Canola | endoplasmic reticulum | 48.42 | 40.53 |
| CDY07280 | Canola | endoplasmic reticulum, plasma membrane | 33.48 | 36.27 |
| TraesCS6D01G135100.1 | Wheat | plastid | 21.27 | 23.04 |
| TraesCS7D01G510600.1 | Wheat | cytosol | 20.81 | 22.55 |
Protein Annotations
| MapMan:19.2.6.1.2.6 | Gene3D:3.60.20.10 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004175 |
| GO:GO:0004298 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005839 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009817 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0048046 | GO:GO:0051603 |
| InterPro:IPR023333 | InterPro:IPR029055 | InterPro:Ntn_hydrolases_N | PFAM:PF00227 | ScanProsite:PS00854 | PFscan:PS51476 |
| PANTHER:PTHR11599 | PANTHER:PTHR11599:SF55 | InterPro:Proteasome_beta1 | InterPro:Proteasome_bsu_CS | InterPro:Proteasome_suB-type | InterPro:Proteasome_sua/b |
| SUPFAM:SSF56235 | EnsemblPlantsGene:TraesCS5D01G292900 | EnsemblPlants:TraesCS5D01G292900.1 | TIGR:cd03757 | : | : |
Description
No Description!
Coordinates
chr5D:-:390360068..390363663
Molecular Weight (calculated)
24333.9 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.224
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRGDWVYE NNGGTCVAIA GADYCVVAAD TRLSVGYNIL TREHSKICEL ADKCVIASSG FQGDIKALQK NLAARELLYQ HQHNKRMSCP AMAQLLSNTL
101: YYKRFFPYYA FNVLGGLDSE GKGCVYSYDA VGSYERTGYS AQGSGSTLIM PVLDNQLKSP SPLLVPARDA VTPLSESEAV DLVKDVFASA TERDIYTGDK
201: VEIVVINKAG TRREYIELRK D
101: YYKRFFPYYA FNVLGGLDSE GKGCVYSYDA VGSYERTGYS AQGSGSTLIM PVLDNQLKSP SPLLVPARDA VTPLSESEAV DLVKDVFASA TERDIYTGDK
201: VEIVVINKAG TRREYIELRK D
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
Arabidopsis Description
PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.