Factsheet for GSMUA_Achr2P00960_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P17520_001
GSMUA_Achr3P32460_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P23470_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P00520_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60820.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT3G60820.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944
AT3G60820.1	GSMUA_Achr4P23470_001	AT5G61010.1	21798944
AT3G60820.1	GSMUA_Achr7P00520_001	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	97.74	97.74
GSMUA_Achr5P18150_001	Banana	cytosol, mitochondrion, peroxisome, plastid	63.35	93.33
TraesCS5B01G284800.1	Wheat	cytosol	84.62	84.62
TraesCS5A01G285600.1	Wheat	plastid	84.62	84.62
TraesCS5D01G292900.1	Wheat	cytosol	84.62	84.62
Zm00001d021051_P002	Maize	mitochondrion	84.16	84.16
Os09t0505600-01	Rice	plastid	84.16	84.16
Zm00001d006085_P002	Maize	extracellular	84.16	84.16
OQU89746	Sorghum	cytosol	70.14	83.78
Zm00001d011021_P001	Maize	cytosol, extracellular, mitochondrion, plastid	30.77	82.93
VIT_15s0048g00900.t01	Wine grape	cytosol	81.9	81.17
KRG99348	Soybean	nucleus	81.9	81.17
KRH45659	Soybean	endoplasmic reticulum, nucleus	81.0	80.27
PGSC0003DMT400009060	Potato	cytosol	80.54	79.82
Os08t0529100-01	Rice	cytosol	78.73	79.45
Solyc02g084920.2.1	Tomato	plastid	80.09	79.37
Bra003428.1-P	Field mustard	cytosol	79.64	78.92
PGSC0003DMT400058139	Potato	cytosol	79.64	78.92
CDX67842	Canola	cytosol	79.64	78.92
EES15319	Sorghum	cytosol	77.83	78.54
CDX71775	Canola	cytosol	79.19	78.48
Bra007565.1-P	Field mustard	cytosol	79.19	78.48
CDY56729	Canola	cytosol	79.19	78.48
CDY52345	Canola	cytosol	79.19	78.48
CDX89080	Canola	cytosol	78.73	78.03
Zm00001d031599_P001	Maize	cytosol, extracellular	76.92	77.63
Bra014468.1-P	Field mustard	cytosol	78.28	77.58
CDX71344	Canola	cytosol	78.28	77.58
AT3G60820.1	Thale cress	cytosol	77.83	77.13
GSMUA_AchrUn_...	Banana	extracellular	35.29	75.0
HORVU5Hr1G076130.2	Barley	plastid	84.62	72.48
Zm00001d018456_P001	Maize	cytosol	30.32	62.04
Zm00001d043281_P001	Maize	cytosol	30.32	62.04
VIT_01s0146g00300.t01	Wine grape	plastid	46.61	53.65
CDX95297	Canola	cytosol	33.03	53.28
CDY46344	Canola	endoplasmic reticulum	47.51	39.77
CDY07280	Canola	endoplasmic reticulum, plasma membrane	34.39	37.25
GSMUA_Achr4P01890_001	Banana	cytosol	23.98	25.98
GSMUA_Achr9P13190_001	Banana	cytosol	21.27	24.61
GSMUA_Achr10P...	Banana	extracellular	4.98	20.0

Protein Annotations

MapMan:19.2.6.1.2.6	Gene3D:3.60.20.10	GO:GO:0000502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004175
GO:GO:0004298	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005839	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0051603	EnsemblPlantsGene:GSMUA_Achr2G00960_001	EnsemblPlants:GSMUA_Achr2P00960_001
EnsemblPlants:GSMUA_Achr2T00960_001	InterPro:IPR023333	InterPro:IPR029055	UniProt:M0S437	InterPro:Ntn_hydrolases_N	PFAM:PF00227
ScanProsite:PS00854	PFscan:PS51476	PANTHER:PTHR11599	PANTHER:PTHR11599:SF107	InterPro:Proteasome_bsu_CS	InterPro:Proteasome_suB-type
InterPro:Proteasome_sua/b	SUPFAM:SSF56235	UniParc:UPI000295D1EC	SEG:seg	:	:

Description

Proteasome subunit beta type-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00960_001]

Coordinates

chr2:-:5616787..5635163

Molecular Weight (calculated)

24371.2 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.130

Length

221 amino acids

Sequence
(BLAST)

001: MALRRDWVYE NNGGTCVAIA GTDYCVIAAD TRLSVGYSIY TRDYSKICKL ADKCVMASSG FQGDLKALQK NLAARHLIYQ HQHNKQMSCP AMAQLLSNTL
101: YYKRFFPYYT FNILGGLDSD GKGCVYTYDA VGSYERVGYS AQGTGAGLII PVLDNQLKSP SPLLLPAKDA VTPLSETEAV DLVKDVFASA TERDIYTGDK
201: VEIMVINASG IRQELMELRK D

Best Arabidopsis Sequence Match ( AT3G60820.3 )
(BLAST)

001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD

Arabidopsis Description

PBF1Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:A0A178V6R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.