Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- nucleus 2
- mitochondrion 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006805_P001 | Maize | cytosol, mitochondrion, nucleus | 12.62 | 49.09 |
| Zm00001d028871_P001 | Maize | nucleus | 12.62 | 49.09 |
| Zm00001d053677_P001 | Maize | cytosol, mitochondrion, nucleus | 12.62 | 49.09 |
| GSMUA_Achr7P24020_001 | Banana | cytosol | 58.41 | 42.88 |
| VIT_04s0008g01350.t01 | Wine grape | cytosol | 50.0 | 37.48 |
| AT5G11980.1 | Thale cress | cytosol | 49.07 | 36.91 |
| Bra023354.1-P | Field mustard | cytosol | 48.83 | 36.73 |
| Solyc01g087650.2.1 | Tomato | plastid | 49.3 | 36.63 |
| KRH07953 | Soybean | cytosol | 49.3 | 36.51 |
| PGSC0003DMT400017657 | Potato | nucleus | 49.07 | 36.4 |
| KRH69706 | Soybean | cytosol | 49.07 | 36.21 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 48.36 | 34.73 |
| CDY04606 | Canola | cytosol | 7.71 | 33.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P32460_001 | EnsemblPlants:GSMUA_Achr3T32460_001 | EnsemblPlantsGene:GSMUA_Achr3G32460_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0017119 | InterPro:COG8 |
| InterPro:Cullin_repeat-like_dom_sf | PANTHER:PTHR21311 | PFAM:PF04124 | SEG:seg | SUPFAM:SSF74788 | TMHMM:TMhelix |
| UniParc:UPI000296B3ED | UniProt:M0SJR0 | MapMan:22.6.2.8 | : | : | : |
Description
conserved oligomeric Golgi complex component 8, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G32460_001]
Coordinates
chr3:+:30382755..30388662
Molecular Weight (calculated)
47795.1 Da
IEP (calculated)
6.386
GRAVY (calculated)
0.239
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCGLDIGFG PQLTLPFVSH HLRFLAANGG AEIVSFDDRR SLSLSTAVEA EISYASVGGG GRGDGREEAT TASALHLLPF TGAAQQHYVS QLLSFTLDRL
101: HKEPELLRVD AERIRRQMQE VAVGNYRAFI AAADTVSFIK EQLSGFDKHL DSLITGIPNL TAGCTEFIES AQKILEESKL NQILLDNHST LLDLLEIPQL
201: MDTCIRNGNY DEALDLEAFV NKLSKMHTEL PIIQALASEV RKTPQSLLSQ LLQKLRSNIQ VKHCISNFNI LCLRSFRDSY CFSASVLDFL LIGTHRHSKP
301: WFMLLHSNLY ILLLGFLCLM LYDVFLFHVL YNFSLPDSSI SCTYGNLISI LQSSIRYLLS PCRIICFSYC AMGLGLVGFD FRGLLPSLFE SAVINLFSKN
401: MSIAVENFQI VLDLHRWVPL PSVGFVTN
101: HKEPELLRVD AERIRRQMQE VAVGNYRAFI AAADTVSFIK EQLSGFDKHL DSLITGIPNL TAGCTEFIES AQKILEESKL NQILLDNHST LLDLLEIPQL
201: MDTCIRNGNY DEALDLEAFV NKLSKMHTEL PIIQALASEV RKTPQSLLSQ LLQKLRSNIQ VKHCISNFNI LCLRSFRDSY CFSASVLDFL LIGTHRHSKP
301: WFMLLHSNLY ILLLGFLCLM LYDVFLFHVL YNFSLPDSSI SCTYGNLISI LQSSIRYLLS PCRIICFSYC AMGLGLVGFD FRGLLPSLFE SAVINLFSKN
401: MSIAVENFQI VLDLHRWVPL PSVGFVTN
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.