Factsheet for Solyc01g087650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc07g042170.2.1
Solyc09g065820.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT5G11980.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT5G11980.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT5G11980.1	Solyc09g065820.2.1	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017657	Potato	nucleus	96.01	95.84
VIT_04s0008g01350.t01	Wine grape	cytosol	79.51	80.21
KRH69706	Soybean	cytosol	77.08	76.55
KRH07953	Soybean	cytosol	76.74	76.47
Bra023354.1-P	Field mustard	cytosol	75.52	76.45
AT5G11980.1	Thale cress	cytosol	75.0	75.92
Bra006136.1-P	Field mustard	cytosol, nucleus, peroxisome	74.83	72.32
EER92716	Sorghum	cytosol	65.28	63.41
Os12t0538300-01	Rice	cytosol	65.8	62.13
TraesCS5B01G101300.1	Wheat	cytosol	65.1	61.58
TraesCS5D01G107800.1	Wheat	cytosol	65.1	61.58
TraesCS5A01G095100.1	Wheat	cytosol	64.76	60.45
HORVU5Hr1G025740.13	Barley	vacuole	65.28	58.2
Zm00001d028871_P001	Maize	nucleus	9.55	50.0
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	36.63	49.3
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	9.38	49.09
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	9.38	49.09
CDY04606	Canola	cytosol	7.81	45.92

Protein Annotations

MapMan:22.6.2.8	InterPro:COG8	InterPro:COG8_Metazoal_Plant	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0000139	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006891
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0017119	UniProt:K4AYF5	PFAM:PF04124
PIRSF:PIRSF015415	PANTHER:PTHR21311	SUPFAM:SSF74788	EnsemblPlantsGene:Solyc01g087650.2	EnsemblPlants:Solyc01g087650.2.1	UniParc:UPI0002763393
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:82590975..82598497

Molecular Weight (calculated)

64105.7 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.205

Length

576 amino acids

Sequence
(BLAST)

001: MSMDSEDPMD EASPVTGLLP LASAAQQPYI SELLSFTLDR LHKEPELLRV DAERIRRQMQ EVAVGNYRAF ISAADALHAI REEVSSVDKH LDSLLNEIPK
101: LTSGCSEFST SAEHILEKRK MNQTLLANHS TLLDLLEIPQ LMDTCVRNGN YDEALDLEAF VSKLSAMHPK LPVIQALAAE VRQTTQSLLS QLLQRLRSNI
201: QLPECLRIIG YLRRIGVFNE YEMRLQFLRC RQAWLSGILD DLDQRNAYEY LKGMVNCHRM HLFDVVNQYR AIFADDTSGR EENYDGGLLF SWAMHQISSH
301: LRTLKMMLPK ITEGGSLSNI LDQCMYCAMG LGWVGLDFRG LLPPLFEEVV LNLFSKNMNA AVENFQLVLD SHRWVPLPAV GFPTSSLSEE SHEDVTPPSS
401: LMEHPPLAVF VNGVSVAMNE LRPCAPLSLK HVLAQELVKG LQGVSDALLR YNTTRMLREN ESLLFLSLCR AFIEVAFPHS VTCFGRCYPG GAALIADATT
501: LFDGISRLLA TSSGSSREVP KPVGNSEANS TSENGDAPKK ENGEIPSSEQ PESRNAEEEP NNVPSENEEK PGNLSS

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.