CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17117	Canola	extracellular	14.29	16.67
CDX78461	Canola	cytosol	47.96	8.44
CDX70438	Canola	cytosol	47.96	8.26
CDX91181	Canola	cytosol	47.96	8.25
CDY67814	Canola	cytosol	46.94	8.08
VIT_04s0008g01350.t01	Wine grape	cytosol	46.94	8.06
Solyc01g087650.2.1	Tomato	plastid	45.92	7.81
PGSC0003DMT400017657	Potato	nucleus	45.92	7.8
EER92716	Sorghum	cytosol	46.94	7.76
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	33.67	7.71
KRH07953	Soybean	cytosol	44.9	7.61
Os12t0538300-01	Rice	cytosol	45.92	7.38
KRH69706	Soybean	cytosol	42.86	7.24
TraesCS5B01G101300.1	Wheat	cytosol	44.9	7.22
TraesCS5D01G107800.1	Wheat	cytosol	44.9	7.22
TraesCS5A01G095100.1	Wheat	cytosol	43.88	6.97
HORVU5Hr1G025740.13	Barley	vacuole	44.9	6.81
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	0.0	0.0
Zm00001d028871_P001	Maize	nucleus	0.0	0.0
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY04606	EnsemblPlantsGene:GSBRNA2T00119162001	GO:A0A078ETT5	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0017119	InterPro:COG8	PANTHER:PTHR21311	PFAM:PF04124
ProteinID:CDY04606	ProteinID:CDY04606.1	SEG:seg	UniParc:UPI0004EF4BC5	MapMan:35.2	:

Description

BnaC05g16440D

Coordinates

chrLK031956:-:234878..236288

Molecular Weight (calculated)

10924.1 Da

IEP (calculated)

4.778

GRAVY (calculated)

0.047

Length

98 amino acids

Sequence
(BLAST)

1: MNQALLANHN TLLDLLEISQ LMATCLRNEK FDEALDLGAF ACKARVVEYH VELSVDDGND NATFVVFDRE MLKLTKQDAA PSVRITSCLA SGFFSIKR

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.