Factsheet for GSMUA_Achr4P21070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P11740_001
GSMUA_Achr2P07390_001
GSMUA_Achr2P09740_001
GSMUA_Achr2P20240_001
GSMUA_Achr3P18710_001
GSMUA_Achr3P20020_001
GSMUA_Achr4P20470_001
GSMUA_Achr5P03630_001
GSMUA_Achr6P23860_001
GSMUA_Achr6P31760_001
GSMUA_Achr6P35890_001
GSMUA_Achr7P06760_001
GSMUA_Achr8P28110_001
GSMUA_Achr8P29370_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	GSMUA_Achr8P29370_001	AT1G22630.1	21798944
AT4G02590.1	GSMUA_Achr6P31760_001	AT1G78680.1	21798944
AT4G02590.1	GSMUA_Achr4P20470_001	AT2G24020.1	21798944
AT4G02590.1	GSMUA_AchrUn_...	AT2G24020.1	21798944
AT4G02590.1	GSMUA_Achr1P11740_001	AT3G28715.1	21798944
AT4G02590.1	GSMUA_Achr6P35890_001	AT3G28715.1	21798944
AT4G02590.1	GSMUA_Achr2P07390_001	AT3G47640.1	21798944
AT4G02590.1	GSMUA_Achr3P20020_001	AT3G47640.1	21798944
AT4G02590.1	GSMUA_AchrUn_...	AT3G47640.1	21798944
AT4G02590.1	GSMUA_Achr2P20240_001	AT4G25315.1	21798944
AT4G02590.1	GSMUA_Achr10P...	AT5G14070.1	21798944
AT4G02590.1	GSMUA_Achr3P18710_001	AT5G14070.1	21798944
AT4G02590.1	GSMUA_Achr6P23860_001	AT5G14070.1	21798944
AT4G02590.1	GSMUA_AchrUn_...	AT5G14070.1	21798944
AT4G02590.1	GSMUA_Achr8P28110_001	AT5G15802.1	21798944
AT4G02590.1	GSMUA_Achr2P09740_001	AT5G45620.1	21798944
AT4G02590.1	GSMUA_Achr5P03630_001	AT5G45620.1	21798944
AT4G02590.1	GSMUA_Achr7P06760_001	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03100_001	Banana	nucleus	80.33	87.96
Zm00001d013073_P002	Maize	nucleus	70.0	73.68
KXG37359	Sorghum	nucleus	69.67	73.59
TraesCS5D01G449200.1	Wheat	nucleus	68.33	72.95
TraesCS5B01G445900.1	Wheat	nucleus	68.33	72.95
OQU88567	Sorghum	nucleus	66.0	71.48
TraesCS5A01G441900.1	Wheat	nucleus	66.0	70.46
Os03t0797600-01	Rice	nucleus	69.0	70.41
Zm00001d018967_P001	Maize	nucleus	65.0	68.42
Bra036256.1-P	Field mustard	nucleus	50.33	66.23
GSMUA_Achr9P25560_001	Banana	nucleus	77.33	65.72
KRH55381	Soybean	cytosol	15.0	65.22
HORVU5Hr1G106310.3	Barley	nucleus	67.67	65.06
VIT_07s0141g00220.t01	Wine grape	nucleus	59.0	61.25
KRH32094	Soybean	nucleus	57.67	61.13
KRG95612	Soybean	nucleus	58.33	59.93
KRH67287	Soybean	nucleus	57.33	58.9
VIT_05s0020g04620.t01	Wine grape	nucleus	61.33	58.79
Bra018539.1-P	Field mustard	nucleus	49.33	58.27
Solyc09g065820.2.1	Tomato	nucleus	57.67	57.28
PGSC0003DMT400049768	Potato	nucleus	57.67	57.28
CDY21898	Canola	nucleus	57.33	57.14
CDX91293	Canola	nucleus	56.67	57.05
CDY22062	Canola	nucleus	57.0	56.25
AT4G02590.1	Thale cress	nucleus	57.33	55.48
PGSC0003DMT400034840	Potato	nucleus	54.67	55.41
CDY18011	Canola	nucleus	56.0	55.26
VIT_14s0030g02230.t01	Wine grape	nucleus	60.67	54.98
Bra000872.1-P	Field mustard	nucleus	56.0	54.37
CDX90930	Canola	nucleus	56.0	54.19
CDX97278	Canola	nucleus	54.0	54.18
Solyc03g005350.2.1	Tomato	nucleus	53.33	54.05
Solyc09g083220.2.1	Tomato	nucleus	54.67	53.95
PGSC0003DMT400015596	Potato	nucleus	54.33	53.8
CDY18143	Canola	nucleus	54.67	53.59
Bra033368.1-P	Field mustard	nucleus	55.0	53.05
CDX89919	Canola	nucleus	55.0	53.05
KRG92679	Soybean	nucleus	55.33	50.0
KRH34087	Soybean	nucleus	54.33	49.7
AT1G03040.3	Thale cress	nucleus	54.67	49.25
GSMUA_Achr9P11300_001	Banana	nucleus	9.33	44.44
GSMUA_Achr10P...	Banana	nucleus	43.67	29.77
GSMUA_Achr5P16470_001	Banana	nucleus	45.0	29.67
GSMUA_Achr4P01910_001	Banana	nucleus	44.33	29.62
GSMUA_Achr10P...	Banana	nucleus	39.0	29.25
GSMUA_Achr3P04630_001	Banana	nucleus	44.33	27.25
GSMUA_Achr9P18080_001	Banana	nucleus	32.67	20.21
GSMUA_Achr3P10120_001	Banana	nucleus	34.33	18.9
GSMUA_Achr1P16830_001	Banana	extracellular	14.0	16.34
GSMUA_Achr6P31370_001	Banana	nucleus	17.0	13.71
GSMUA_Achr10P...	Banana	plastid	15.0	13.12
GSMUA_Achr6P30080_001	Banana	nucleus	16.67	12.47
GSMUA_Achr8P15670_001	Banana	nucleus	14.0	11.9
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	19.0	9.61
GSMUA_Achr5P02280_001	Banana	nucleus	16.67	9.19
GSMUA_Achr4P31770_001	Banana	nucleus	17.67	8.94
GSMUA_Achr5P18390_001	Banana	nucleus	18.0	8.91
GSMUA_Achr7P20810_001	Banana	nucleus	15.67	7.85

Protein Annotations

EnsemblPlants:GSMUA_Achr4P21070_001	EnsemblPlants:GSMUA_Achr4T21070_001	EnsemblPlantsGene:GSMUA_Achr4G21070_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF103	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000295F545	UniProt:M0SQS0	MapMan:15.5.32	:	:

Description

BHLH transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G21070_001]

Coordinates

chr4:-:21591092..21595872

Molecular Weight (calculated)

32268.3 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.537

Length

300 amino acids

Sequence
(BLAST)

001: MANHQPPPPQ QQPEGIVDDF FEQIFSMPSS YVAAGDTGLA GPDGGLAGGP LHRNSADAAG GGGPFSLGLS LEQGSSSGKR HREDPEGKTE RDTFPSAGLF
101: APGFGHLQSY QIRPNPPPQA FHGQAKQGGV ASMPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPNTN KTDRAAMLDE ILDYVKFLRL
201: QVKVLSMSRL GGAGAVAQLI ADIPLSVEGE AGSKQQVWEK WSTDGTERQV AKLMEEDIGA AMQFLQSKAL CMMPISLAMA IYDTHQPEAQ PVKPEPNTPS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.