Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033368.1-P | Field mustard | nucleus | 99.02 | 97.43 |
| CDX89919 | Canola | nucleus | 99.02 | 97.43 |
| CDY21898 | Canola | nucleus | 81.05 | 82.39 |
| CDY22062 | Canola | nucleus | 80.72 | 81.25 |
| CDX91293 | Canola | nucleus | 78.76 | 80.87 |
| AT1G03040.3 | Thale cress | nucleus | 86.27 | 79.28 |
| CDY18011 | Canola | nucleus | 78.76 | 79.28 |
| CDX97278 | Canola | nucleus | 76.8 | 78.6 |
| CDX90930 | Canola | nucleus | 79.08 | 78.06 |
| KRG95612 | Soybean | nucleus | 69.28 | 72.6 |
| KRH32094 | Soybean | nucleus | 66.01 | 71.38 |
| KRH67287 | Soybean | nucleus | 67.97 | 71.23 |
| Solyc09g065820.2.1 | Tomato | nucleus | 69.61 | 70.53 |
| PGSC0003DMT400049768 | Potato | nucleus | 69.28 | 70.2 |
| Os07t0182200-01 | Rice | cytosol | 31.05 | 69.85 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 65.69 | 69.55 |
| KRH55381 | Soybean | cytosol | 14.71 | 65.22 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 53.59 | 54.67 |
| Zm00001d013073_P002 | Maize | nucleus | 50.33 | 54.04 |
| KXG37359 | Sorghum | nucleus | 50.0 | 53.87 |
| OQU88567 | Sorghum | nucleus | 48.37 | 53.43 |
| Os03t0797600-01 | Rice | nucleus | 51.31 | 53.4 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 49.02 | 53.38 |
| TraesCS5D01G449200.1 | Wheat | nucleus | 49.02 | 53.38 |
| Zm00001d018967_P001 | Maize | nucleus | 49.67 | 53.33 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 47.06 | 52.55 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 46.08 | 50.18 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 47.71 | 46.79 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 53.27 | 46.18 |
| CDY55014 | Canola | nucleus | 33.01 | 34.95 |
| CDY02785 | Canola | nucleus | 33.33 | 34.46 |
| CDY32733 | Canola | nucleus | 33.66 | 34.11 |
| CDY11836 | Canola | nucleus | 31.37 | 33.57 |
| CDY62262 | Canola | nucleus | 32.68 | 33.11 |
| CDY46132 | Canola | endoplasmic reticulum | 18.63 | 32.39 |
| CDX88653 | Canola | nucleus | 31.7 | 32.33 |
| CDX68710 | Canola | nucleus | 33.99 | 31.8 |
| CDY28232 | Canola | nucleus | 33.99 | 31.8 |
| CDY20289 | Canola | nucleus | 21.9 | 31.75 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 20.91 | 31.53 |
| CDX76819 | Canola | nucleus | 34.31 | 30.88 |
| CDY34780 | Canola | nucleus | 33.99 | 30.77 |
| CDY37185 | Canola | mitochondrion | 9.48 | 29.59 |
| CDY46133 | Canola | nucleus | 16.67 | 26.7 |
| CDY24734 | Canola | plastid | 9.8 | 21.13 |
| CDY01438 | Canola | nucleus, plastid | 12.42 | 17.43 |
| CDY12804 | Canola | nucleus, plastid | 12.09 | 17.13 |
| CDY65390 | Canola | nucleus | 11.11 | 16.27 |
| CDY35224 | Canola | nucleus | 13.07 | 15.44 |
| CDY00603 | Canola | nucleus, plastid | 13.4 | 14.96 |
| CDY67566 | Canola | nucleus, plastid | 13.4 | 14.96 |
| CDX91917 | Canola | nucleus | 14.38 | 12.68 |
| CDY44048 | Canola | nucleus, plastid | 13.73 | 12.32 |
| CDX83214 | Canola | nucleus | 13.73 | 12.07 |
| CDY22448 | Canola | nucleus, plastid | 13.73 | 11.93 |
| CDX75629 | Canola | nucleus | 13.4 | 11.85 |
| CDY30375 | Canola | nucleus | 15.69 | 11.82 |
| CDX69281 | Canola | nucleus, plastid | 13.4 | 11.75 |
| CDY14866 | Canola | nucleus | 15.36 | 11.66 |
| CDY29961 | Canola | nucleus | 15.36 | 11.55 |
| CDX70453 | Canola | nucleus | 15.36 | 11.55 |
| CDY06865 | Canola | nucleus | 13.4 | 11.42 |
| CDX83509 | Canola | nucleus | 15.36 | 11.38 |
| CDX74328 | Canola | nucleus | 14.38 | 11.37 |
| CDY35220 | Canola | nucleus | 13.4 | 11.05 |
| CDX80064 | Canola | nucleus | 14.38 | 11.0 |
| CDY65446 | Canola | nucleus | 11.76 | 10.88 |
| CDY42809 | Canola | nucleus | 14.71 | 10.87 |
| CDY21498 | Canola | nucleus | 13.73 | 10.85 |
| CDX67873 | Canola | nucleus | 10.78 | 10.75 |
| CDY31989 | Canola | nucleus | 16.67 | 10.71 |
| CDY11401 | Canola | extracellular | 12.09 | 10.51 |
| CDY66254 | Canola | nucleus | 13.73 | 10.5 |
| CDY06870 | Canola | nucleus | 15.36 | 10.33 |
| CDY06026 | Canola | nucleus | 14.71 | 10.18 |
| CDX71916 | Canola | nucleus | 14.71 | 10.16 |
| CDY05725 | Canola | nucleus | 16.67 | 10.06 |
| CDX76616 | Canola | extracellular | 11.76 | 10.06 |
| CDY06867 | Canola | nucleus | 15.36 | 9.75 |
| CDX83349 | Canola | nucleus | 12.75 | 9.65 |
| CDY50911 | Canola | nucleus | 8.17 | 9.23 |
| CDX94963 | Canola | nucleus | 14.71 | 9.04 |
| CDY22636 | Canola | nucleus | 14.38 | 8.96 |
| CDY64745 | Canola | nucleus | 14.38 | 8.76 |
| CDY06358 | Canola | nucleus | 14.05 | 8.76 |
| CDY35222 | Canola | nucleus | 14.71 | 7.8 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078G0K6 | UniProt:A0A078G0K6 | EnsemblPlants:CDY18143 | ProteinID:CDY18143 |
| ProteinID:CDY18143.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00002665001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF15 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE7112 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC05g01660DBnaC05g01660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0K6]
Coordinates
chrLK032083:-:53331..55181
Molecular Weight (calculated)
32763.1 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.438
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNNNNLSE QPPSDDFFEQ ILGISNFSAS SSSGGLSGLP GGLSGGVGTP PPMMLQLGSG EEGSHHNHMG GGGGGPLGFH NGMFPLGLSL DQGGKGQGFL
101: KPDGSGKRFQ DDVVDNRCSS MKPVFHGQPM TQPAPPMPHQ QSSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPTVNKTDRA AMIDEIVDYV
201: KFLRLQVKVL SMSRLGGAGA VAPLVTEMPL SSSTEDETQA VWEKWSDDGT ERQVAKLMEE NVGAAMQLLQ SKALCIMPVS LAMAIYHSQP PDTSSSVVKP
301: EMNPPQ
101: KPDGSGKRFQ DDVVDNRCSS MKPVFHGQPM TQPAPPMPHQ QSSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPTVNKTDRA AMIDEIVDYV
201: KFLRLQVKVL SMSRLGGAGA VAPLVTEMPL SSSTEDETQA VWEKWSDDGT ERQVAKLMEE NVGAAMQLLQ SKALCIMPVS LAMAIYHSQP PDTSSSVVKP
301: EMNPPQ
001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.