Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G449200.1 | Wheat | nucleus | 87.18 | 96.8 |
| TraesCS5B01G445900.1 | Wheat | nucleus | 86.86 | 96.44 |
| TraesCS5A01G441900.1 | Wheat | nucleus | 78.85 | 87.54 |
| KXG37359 | Sorghum | nucleus | 75.0 | 82.39 |
| Zm00001d018967_P001 | Maize | nucleus | 67.31 | 73.68 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 59.94 | 68.25 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 65.06 | 67.67 |
| KRH55381 | Soybean | cytosol | 13.78 | 62.32 |
| Bra036256.1-P | Field mustard | nucleus | 44.55 | 60.96 |
| KRH32094 | Soybean | nucleus | 50.32 | 55.48 |
| Bra018539.1-P | Field mustard | nucleus | 44.23 | 54.33 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 52.88 | 52.72 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 48.72 | 52.6 |
| KRG95612 | Soybean | nucleus | 48.72 | 52.05 |
| CDX91293 | Canola | nucleus | 49.68 | 52.01 |
| KRH67287 | Soybean | nucleus | 47.44 | 50.68 |
| CDY21898 | Canola | nucleus | 48.72 | 50.5 |
| PGSC0003DMT400049768 | Potato | nucleus | 48.72 | 50.33 |
| Solyc09g065820.2.1 | Tomato | nucleus | 48.4 | 50.0 |
| AT4G02590.1 | Thale cress | nucleus | 49.68 | 50.0 |
| CDY18011 | Canola | nucleus | 48.72 | 50.0 |
| CDY22062 | Canola | nucleus | 48.4 | 49.67 |
| PGSC0003DMT400034840 | Potato | nucleus | 47.12 | 49.66 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 52.56 | 49.55 |
| Bra000872.1-P | Field mustard | nucleus | 49.04 | 49.51 |
| PGSC0003DMT400015596 | Potato | nucleus | 48.08 | 49.51 |
| CDX97278 | Canola | nucleus | 47.12 | 49.16 |
| CDX90930 | Canola | nucleus | 48.72 | 49.03 |
| Solyc09g083220.2.1 | Tomato | nucleus | 47.76 | 49.01 |
| Solyc03g005350.2.1 | Tomato | nucleus | 45.51 | 47.97 |
| CDY18143 | Canola | nucleus | 46.79 | 47.71 |
| Bra033368.1-P | Field mustard | nucleus | 46.79 | 46.95 |
| CDX89919 | Canola | nucleus | 46.79 | 46.95 |
| KRH34087 | Soybean | nucleus | 47.76 | 45.43 |
| KRG92679 | Soybean | nucleus | 48.08 | 45.18 |
| AT1G03040.3 | Thale cress | nucleus | 46.79 | 43.84 |
| HORVU6Hr1G085500.3 | Barley | nucleus | 38.78 | 33.43 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 33.33 | 26.33 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 13.14 | 21.81 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 32.05 | 21.46 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 32.37 | 21.0 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 15.06 | 15.88 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 15.06 | 13.78 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 13.46 | 12.43 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 15.38 | 12.12 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 13.78 | 11.88 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 14.74 | 9.33 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 16.35 | 9.32 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 13.78 | 9.27 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G106310.3 | EnsemblPlantsGene:HORVU5Hr1G106310 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF103 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B483BCD | UniProt:A0A287SLX4 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:623892975..623896775
Molecular Weight (calculated)
33558.8 Da
IEP (calculated)
9.117
GRAVY (calculated)
-0.615
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: RPTLAEETEH ALPAGSRRRG EHRLGTRRRP AMAGQPPQGP EDDFLDQFFS LTSSLSAAGR PSGDQPFSLA LSLDAASDAS GSRGGIGDDA GNAAERDNVQ
101: LPGLFPPVFG GGLQPPHLRP NHPPPQVRFA QPPKQGGPAG GPQPPAPRPK VRARRGQATD PHSIAERLRR ERIAERMRAL QELVPNTNKT DRAVMLDEIL
201: DYVKFLRLQV KVLSMSRLGG AGAVAQLVSD IPLSVKGEAS DSGGKQQIWE KWSTDGTEKQ VAKLMDEDIG AAMQFLQSKA LCMMPVSLAM AIYDTQHSQD
301: GQPVKPEPNN TA
101: LPGLFPPVFG GGLQPPHLRP NHPPPQVRFA QPPKQGGPAG GPQPPAPRPK VRARRGQATD PHSIAERLRR ERIAERMRAL QELVPNTNKT DRAVMLDEIL
201: DYVKFLRLQV KVLSMSRLGG AGAVAQLVSD IPLSVKGEAS DSGGKQQIWE KWSTDGTEKQ VAKLMDEDIG AAMQFLQSKA LCMMPVSLAM AIYDTQHSQD
301: GQPVKPEPNN TA
001: MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
101: TGKRFQDDVL DNRCSSMKPI FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP
301: PP
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT1G03040]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.