Factsheet for HORVU2Hr1G028530.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G054930.3
HORVU6Hr1G066640.4
HORVU6Hr1G093960.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	HORVU1Hr1G054930.3	AT4G17680.1	21798944
AT3G47640.1	HORVU6Hr1G066640.4	AT4G17680.1	21798944
AT3G47640.1	HORVU6Hr1G093960.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G163900.2	Wheat	nucleus	82.29	86.1
TraesCS2A01G157800.1	Wheat	nucleus	78.97	84.25
TraesCS2B01G183300.1	Wheat	nucleus	78.23	81.54
Os07t0628500-01	Rice	nucleus	55.72	56.98
EER99751	Sorghum	nucleus	53.87	54.89
Zm00001d022225_P001	Maize	nucleus	50.55	51.5
Os08t0494375-00	Rice	nucleus	31.0	48.84
CDX86900	Canola	cytosol	9.96	40.3
CDY17794	Canola	cytosol	11.44	39.24
GSMUA_AchrUn_...	Banana	nucleus	29.89	38.21
KRH03461	Soybean	nucleus	28.78	34.67
KRH56921	Soybean	nucleus	28.04	34.23
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	46.13	31.81
Solyc03g116340.2.1	Tomato	nucleus	26.57	29.88
PGSC0003DMT400001617	Potato	nucleus	26.2	29.46
VIT_17s0000g06000.t01	Wine grape	nucleus	26.57	28.12
CDY21793	Canola	nucleus	23.99	27.9
CDX77869	Canola	nucleus	23.99	27.9
AT3G47640.1	Thale cress	nucleus	24.35	27.5
Bra019509.1-P	Field mustard	nucleus	23.62	27.35
VIT_14s0108g00480.t01	Wine grape	plastid	32.84	27.13
CDY53423	Canola	nucleus	22.51	25.63
CDX83022	Canola	nucleus	22.51	25.52
GSMUA_Achr2P07390_001	Banana	nucleus	18.08	21.49
Bra033788.1-P	Field mustard	nucleus	16.24	10.02

Protein Annotations

EnsemblPlants:HORVU2Hr1G028530.3	EnsemblPlantsGene:HORVU2Hr1G028530	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF51	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	UniParc:UPI000B489589
UniProt:A0A287HIA8	MapMan:15.5.32	MapMan:25.4.1.4	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:97116890..97119126

Molecular Weight (calculated)

30377.1 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.679

Length

271 amino acids

Sequence
(BLAST)

001: LRSERRRGGA GSSFAVGMVP RDMVNAPAER LHVQGSVVNK KCEKKVPKKI HKSEREKRKR GTQNDLFNEL GAMLELDRQN NGKACVLGDT TRILKDLVSQ
101: VESLRKENTT LKNESHYVVL ERNELRDDNS MLRNEILELQ NKLRMGLQSN PIWSQDTTRS AVAVPYPTRG VFPVQHSPHP PVITSTALSL QPVITEQCYV
201: APPRELQLFP EVSSASTEDS ELSQDQGISN SVTRPQARYP TPVVMSPVNE FSILPRMGEE QQYSSGTSEE V

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.