Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G157800.1 | Wheat | nucleus | 91.51 | 93.31 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 87.26 | 86.92 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 86.1 | 82.29 |
| Os07t0628500-01 | Rice | nucleus | 60.62 | 59.25 |
| EER99751 | Sorghum | nucleus | 58.69 | 57.14 |
| Zm00001d022225_P001 | Maize | nucleus | 55.21 | 53.76 |
| Os08t0494375-00 | Rice | nucleus | 32.05 | 48.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.2 | 40.57 |
| CDX86900 | Canola | cytosol | 9.65 | 37.31 |
| TraesCS2D01G079100.1 | Wheat | plastid | 47.1 | 37.08 |
| CDY17794 | Canola | cytosol | 11.2 | 36.71 |
| KRH56921 | Soybean | nucleus | 29.34 | 34.23 |
| KRH03461 | Soybean | nucleus | 29.73 | 34.22 |
| CDY21793 | Canola | nucleus | 25.87 | 28.76 |
| AT3G47640.1 | Thale cress | nucleus | 26.64 | 28.75 |
| Bra019509.1-P | Field mustard | nucleus | 25.87 | 28.63 |
| Solyc03g116340.2.1 | Tomato | nucleus | 26.64 | 28.63 |
| CDX77869 | Canola | nucleus | 25.48 | 28.33 |
| PGSC0003DMT400001617 | Potato | nucleus | 26.25 | 28.22 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 33.98 | 26.83 |
| CDX83022 | Canola | nucleus | 24.71 | 26.78 |
| VIT_17s0000g06000.t01 | Wine grape | nucleus | 26.25 | 26.56 |
| CDY53423 | Canola | nucleus | 23.94 | 26.05 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 19.3 | 21.93 |
| Bra033788.1-P | Field mustard | nucleus | 18.15 | 10.71 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G163900.2 | EnsemblPlantsGene:TraesCS2D01G163900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 | PFscan:PS50888 | SUPFAM:SSF47459 | MapMan:15.5.32 | MapMan:25.4.1.4 |
Description
No Description!
Coordinates
chr2D:+:108920452..108922427
Molecular Weight (calculated)
29167.5 Da
IEP (calculated)
7.132
GRAVY (calculated)
-0.759
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPRDMVNAP AERLHVQGSV VNRKCEKKVP KKIHKSEREK RKRGTQNDLF NELGAMLEPD RQNNGKACVL GDTTRILKDL VSQVESLRKE NSTLKNESHY
101: VVLERNELRD DNSMLRNEIL ELQNKLRVRL QSNPIWSQDT TRSAVAVPYP TSGMFPVQHS PHSPVITSTA LSLQPVITEQ CYAAPPRELQ LFPEASSAST
201: EDSELSQDQG ISNNVTRPQA RYPTPAVMSP VNEFPILPRM GEEQQYSSGT SEEDGVHRV
101: VVLERNELRD DNSMLRNEIL ELQNKLRVRL QSNPIWSQDT TRSAVAVPYP TSGMFPVQHS PHSPVITSTA LSLQPVITEQ CYAAPPRELQ LFPEASSAST
201: EDSELSQDQG ISNNVTRPQA RYPTPAVMSP VNEFPILPRM GEEQQYSSGT SEEDGVHRV
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.