Factsheet for TraesCS2D01G079100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6A01G412800.1
TraesCS6B01G289500.1
TraesCS6B01G462100.1
TraesCS6D01G243000.1
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47640.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6D01G243000.1	AT4G17680.1	21798944
AT3G47640.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT3G47640.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G095900.1	Wheat	nucleus	67.17	81.85
TraesCS2A01G081300.1	Wheat	plastid	74.47	72.49
Os03t0379300-01	Rice	nucleus	47.42	61.9
KXG39270	Sorghum	nucleus	50.76	61.62
Zm00001d029339_P001	Maize	nucleus	49.54	60.37
HORVU2Hr1G013450.3	Barley	cytosol, mitochondrion, nucleus, plastid	68.09	57.0
TraesCS2D01G163900.2	Wheat	nucleus	37.08	47.1
GSMUA_AchrUn_...	Banana	nucleus	27.36	42.45
CDY17794	Canola	cytosol	9.42	39.24
CDX86900	Canola	cytosol	7.29	35.82
KRH56921	Soybean	nucleus	23.71	35.14
KRH03461	Soybean	nucleus	24.01	35.11
CDY21793	Canola	nucleus	20.36	28.76
CDX77869	Canola	nucleus	20.36	28.76
AT3G47640.1	Thale cress	nucleus	20.97	28.75
Bra019509.1-P	Field mustard	nucleus	20.36	28.63
Solyc03g116340.2.1	Tomato	nucleus	20.97	28.63
VIT_17s0000g06000.t01	Wine grape	nucleus	22.19	28.52
CDX83022	Canola	nucleus	20.67	28.45
PGSC0003DMT400001617	Potato	nucleus	20.67	28.22
VIT_14s0108g00480.t01	Wine grape	plastid	27.66	27.74
CDY53423	Canola	nucleus	20.06	27.73
GSMUA_Achr2P07390_001	Banana	nucleus	15.2	21.93
Bra033788.1-P	Field mustard	nucleus	15.5	11.62

Protein Annotations

EnsemblPlants:TraesCS2D01G079100.1	EnsemblPlantsGene:TraesCS2D01G079100	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF62	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	MapMan:15.5.32
MapMan:25.4.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:33892173..33894192

Molecular Weight (calculated)

36240.8 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.699

Length

329 amino acids

Sequence
(BLAST)

001: MARASSPRHA TASATERARH APLRPFSSSS SRLSAIARTK NREARRRQPF PPISFHSRRL RSRKGMVAML PAARGDAAPA ASAGAAEKLL HGPLADGKCK
101: KKAPRMIHKA EREKHKRDLL NDLFSELGEM LEADRQTNGK ACILTDTTRI LRDLLSQLES LRKENSTLQN ESHYVTMERN ELQDENSVLR NEILELQKEL
201: TMPHAVSHSA NTVFPSQQPM QPATIASAVF PLQQPLLQTT ILEHPYAPPP PPRELKLFPD AASDVEGLEP SEDPEATNHI TRPLARYPTE SASWPVTVSL
301: GLPRMEDEQC SSGTTGSSNE GSSSASSRD

Best Arabidopsis Sequence Match ( AT3G47640.1 )
(BLAST)

001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE

Arabidopsis Description

BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.