Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s1522g00010.t01 | |
| VIT_01s0026g02200.t01 | |
| VIT_02s0012g00290.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G47640.1 | VIT_01s0026g02200.t01 | AT1G69690.1 | 21798944 |
| AT3G47640.1 | VIT_02s0012g00290.t01 | AT4G17680.1 | 21798944 |
| AT3G47640.1 | VIT_00s1522g00010.t01 | AT5G65495.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03461 | Soybean | nucleus | 43.36 | 49.33 |
| KRH56921 | Soybean | nucleus | 42.19 | 48.65 |
| CDY17794 | Canola | cytosol | 14.06 | 45.57 |
| Solyc03g116340.2.1 | Tomato | nucleus | 42.58 | 45.23 |
| PGSC0003DMT400001617 | Potato | nucleus | 42.58 | 45.23 |
| AT3G47640.1 | Thale cress | nucleus | 38.67 | 41.25 |
| Bra019509.1-P | Field mustard | nucleus | 35.94 | 39.32 |
| CDX77869 | Canola | nucleus | 35.55 | 39.06 |
| CDY21793 | Canola | nucleus | 35.55 | 39.06 |
| CDX86900 | Canola | cytosol | 10.16 | 38.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.3 | 35.38 |
| VIT_14s0108g00480.t01 | Wine grape | plastid | 45.31 | 35.37 |
| CDX83022 | Canola | nucleus | 32.81 | 35.15 |
| CDY53423 | Canola | nucleus | 30.47 | 32.77 |
| Zm00001d048901_P002 | Maize | nucleus | 32.42 | 30.29 |
| Os08t0494375-00 | Rice | nucleus | 19.53 | 29.07 |
| KXG28874 | Sorghum | nucleus | 31.25 | 28.88 |
| Os07t0628500-01 | Rice | nucleus | 29.69 | 28.68 |
| Os03t0379300-01 | Rice | nucleus | 27.73 | 28.17 |
| GSMUA_Achr3P20020_001 | Banana | nucleus | 34.38 | 27.5 |
| TraesCS2B01G095900.1 | Wheat | nucleus | 28.91 | 27.41 |
| Zm00001d022225_P001 | Maize | nucleus | 28.12 | 27.07 |
| Os11t0601700-01 | Rice | nucleus | 29.3 | 26.98 |
| EER99751 | Sorghum | nucleus | 27.73 | 26.69 |
| HORVU2Hr1G028530.3 | Barley | cytosol, mitochondrion, nucleus | 28.12 | 26.57 |
| TraesCS4B01G125400.1 | Wheat | nucleus | 28.12 | 26.37 |
| Zm00001d029339_P001 | Maize | nucleus | 27.73 | 26.3 |
| TraesCS2D01G163900.2 | Wheat | nucleus | 26.56 | 26.25 |
| TraesCS2A01G157800.1 | Wheat | nucleus | 25.78 | 25.98 |
| KXG39270 | Sorghum | nucleus | 27.34 | 25.83 |
| TraesCS2B01G183300.1 | Wheat | nucleus | 26.17 | 25.77 |
| TraesCS2D01G079100.1 | Wheat | plastid | 28.52 | 22.19 |
| GSMUA_Achr2P07390_001 | Banana | nucleus | 18.36 | 20.61 |
| TraesCS4A01G163300.1 | Wheat | mitochondrion | 18.36 | 20.52 |
| TraesCS2A01G081300.1 | Wheat | plastid | 26.95 | 20.41 |
| HORVU2Hr1G013450.3 | Barley | cytosol, mitochondrion, nucleus, plastid | 26.56 | 17.3 |
| Bra033788.1-P | Field mustard | nucleus | 21.09 | 12.3 |
Protein Annotations
| EntrezGene:100265609 | wikigene:100265609 | MapMan:15.5.32 | MapMan:25.4.1.4 | EMBL:AM460027 | ProteinID:CAN76902 |
| ProteinID:CAN76902.1 | ProteinID:CCB43099 | ProteinID:CCB43099.1 | ncoils:Coil | UniProt:F6GT90 | EMBL:FN594950 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0010106 | GO:GO:0019725 | GO:GO:0046983 | GO:GO:0055072 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | EntrezGene:LOC100265609 | wikigene:LOC100265609 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF51 |
| SUPFAM:SSF47459 | UniParc:UPI0002109CC9 | ArrayExpress:VIT_17s0000g06000 | EnsemblPlantsGene:VIT_17s0000g06000 | EnsemblPlants:VIT_17s0000g06000.t01 | RefSeq:XP_002268400 |
| RefSeq:XP_002268400.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr17:-:6557045..6562155
Molecular Weight (calculated)
28112.3 Da
IEP (calculated)
7.166
GRAVY (calculated)
-0.511
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEVPPSLV DKVNVVAENP LTRSCPTKNN QRKVPKRVHK AVREKLKREH LHDLFLELAN ALDLTHQNTG KAFILCEAIR LVKDTIAQID CLKKENAALF
101: SESHYVNIEK NELRDENSVL EDQIDKLQTE IKERAALYKP DLNSAPSEFQ QTEVTQHCPG SSLRFPSADQ ALQQSSVVGP VLVVPFASGL RAYPGAGAPR
201: SISIVSKPHA RYPTPGDSWP SQVLGDQPTA RQKFELSGSI NNSSSCGIGE EGSGKV
101: SESHYVNIEK NELRDENSVL EDQIDKLQTE IKERAALYKP DLNSAPSEFQ QTEVTQHCPG SSLRFPSADQ ALQQSSVVGP VLVVPFASGL RAYPGAGAPR
201: SISIVSKPHA RYPTPGDSWP SQVLGDQPTA RQKFELSGSI NNSSSCGIGE EGSGKV
001: MVSKTPSTSS DEANATADER CRKGKVPKRI NKAVRERLKR EHLNELFIEL ADTLELNQQN SGKASILCEA TRFLKDVFGQ IESLRKEHAS LLSESSYVTT
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
101: EKNELKEETS VLETEISKLQ NEIEARANQS KPDLNTSPAP EYHHHHYQQQ HPERVSQFPG LPIFQGPGFQ QSATTLHPPA TVLVLPIQPD PQTQDISEMT
201: QAQQPLMFNS SNVSKPCPRY ASAADSWSSR LLGERLKASE
Arabidopsis Description
BHLH47Transcription factor bHLH47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.