Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0012g00290.t01 | |
| VIT_13s0019g04710.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65495.1 | VIT_13s0019g04710.t01 | AT3G54850.1 | 21798944 |
| AT5G65495.1 | VIT_02s0012g00290.t01 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041764 | Potato | cytosol | 59.79 | 59.79 |
| AT5G65495.1 | Thale cress | nucleus | 57.73 | 59.57 |
| Bra024392.1-P | Field mustard | nucleus | 54.64 | 57.61 |
| CDY67216 | Canola | nucleus | 54.64 | 57.61 |
| CDY14574 | Canola | nucleus | 54.64 | 55.79 |
| Solyc11g010680.2.1 | Tomato | cytosol | 61.86 | 48.78 |
Protein Annotations
| ArrayExpress:VIT_00s1522g00010 | EMBL:FN596874 | EnsemblPlants:VIT_00s1522g00010.t01 | EnsemblPlantsGene:VIT_00s1522g00010 | EntrezGene:100241186 | EntrezGene:LOC100241186 |
| ncoils:Coil | ProteinID:CCB62958 | ProteinID:CCB62958.1 | RefSeq:XP_002270761 | RefSeq:XP_002270761.2 | SEG:seg |
| unigene:Vvi.17431 | UniParc:UPI0002108F1A | UniProt:F6I7N9 | wikigene:100241186 | wikigene:LOC100241186 | MapMan:35.2 |
Description
No Description!
Coordinates
chrUn:+:39440734..39441141
Molecular Weight (calculated)
11643.0 Da
IEP (calculated)
8.484
GRAVY (calculated)
-0.872
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MCYDQLRSLS EDEIIPPRTT RSPDENAVVV EDLRSRLAET QARLERARAR EAELSRRLQE MKRFVSVMEI LETYLKRRYQ EQQQHVERLL SVIPQKQ
1: MCYGHNQSLS SRSSLRRRSH DGEDDSVVDD LRDRLAETEA RLRRARAREA ELSRRLEHMK RFVSVMEIIE TFLERRFQEQ KDRIARLFSP VSTK
Arabidopsis Description
SKIP34Protein SKIP34 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWU7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.