Factsheet for VIT_13s0019g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01
VIT_04s0023g03230.t01
VIT_07s0005g04590.t01
VIT_07s0031g01760.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_13s0019g04710.t01
VIT_19s0014g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	VIT_07s0005g04590.t01	AT1G04130.1	21798944
AT3G54850.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT3G54850.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944
AT3G54850.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G54850.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT3G54850.1	VIT_13s0019g04710.t01	AT3G54850.1	21798944
AT3G54850.1	VIT_04s0023g03230.t01	AT4G36110.1	21798944
AT3G54850.1	VIT_07s0031g01760.t01	AT4G39470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04403	Soybean	mitochondrion	45.06	78.18
Solyc11g008390.1.1	Tomato	cytosol	75.96	76.44
PGSC0003DMT400019235	Potato	cytosol	75.96	76.44
KRG91959	Soybean	cytosol	75.64	75.28
KRH34817	Soybean	cytosol	75.0	74.53
AT3G54850.1	Thale cress	cytosol	66.88	66.46
TraesCS7A01G001900.1	Wheat	cytosol	55.73	66.04
Bra007105.1-P	Field mustard	cytosol	65.61	64.98
CDX78273	Canola	cytosol	65.61	64.98
HORVU7Hr1G000780.1	Barley	cytosol	59.39	63.22
TraesCS7D01G001600.2	Wheat	cytosol, plastid	60.51	63.12
EER87680	Sorghum	cytosol	60.35	63.06
Os06t0102700-01	Rice	plasma membrane	60.03	62.42
GSMUA_Achr3P00280_001	Banana	cytosol	59.08	61.53
Zm00001d045632_P004	Maize	cytosol, mitochondrion	59.87	59.68
TraesCS4A01G498700.1	Wheat	plastid	59.24	58.77
GSMUA_Achr1P24290_001	Banana	cytosol	56.69	58.27
VIT_06s0004g04530.t01	Wine grape	cytosol	60.67	55.87
CDX73439	Canola	plastid	64.97	45.28
VIT_01s0011g04770.t01	Wine grape	cytosol	45.38	44.6
VIT_03s0038g03660.t01	Wine grape	cytosol	42.83	41.97
VIT_00s0524g00030.t01	Wine grape	cytosol	28.98	40.53
VIT_04s0043g00840.t01	Wine grape	cytosol	29.3	40.44
VIT_18s0001g14180.t01	Wine grape	cytosol	41.56	38.16
VIT_13s0067g01460.t01	Wine grape	cytosol	38.69	35.32
VIT_18s0001g09130.t01	Wine grape	cytosol	20.54	33.25
VIT_08s0058g01100.t01	Wine grape	plastid	32.64	30.28
VIT_00s2269g00010.t01	Wine grape	plastid	21.66	30.09
VIT_10s0003g01730.t01	Wine grape	mitochondrion	34.71	30.03
VIT_07s0005g03520.t01	Wine grape	cytosol	36.94	29.48
VIT_07s0129g00590.t01	Wine grape	cytosol	39.33	29.13
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	31.21	28.87
VIT_01s0026g00190.t01	Wine grape	cytosol	28.98	26.65

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100265038	wikigene:100265038	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB56157	ProteinID:CCB56157.1	UniProt:F6HND8	EMBL:FN595998
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100265038
wikigene:LOC100265038	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC55110
UniParc:UPI00015C995E	InterPro:Ubox_domain	ArrayExpress:VIT_13s0019g04710	EnsemblPlantsGene:VIT_13s0019g04710	EnsemblPlants:VIT_13s0019g04710.t01	unigene:Vvi.14970
RefSeq:XP_002270524	RefSeq:XP_002270524.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HND8]

Coordinates

chr13:+:6301141..6304957

Molecular Weight (calculated)

69205.6 Da

IEP (calculated)

5.956

GRAVY (calculated)

-0.225

Length

628 amino acids

Sequence
(BLAST)

001: MSPTKDSNKI SVLNQLLAVV KEISGLPECR NTTKKMYYNL VRRVKLLSPL FEELKDSEEE LEDSEIRAFE LLRVALDSAM DLLKLVNEGS KLYQALQRDK
101: IADKFCQMTD QIEASLSSIP YDKLNVSEEV QEQIELVHAQ FKRAKGRTDS PDLQLDRDLE IAQKEKDPDP EILRRLSENL QLRTINDLKK ESLALHEMVI
201: SSSVDPGDCF AKMSSLLRKL KDYVLTINPE ADTSEGEKGF IKHRSPVIPD DFRCPISLEL MRDPVIVSTG QTYERSCIQK WLDAGHKTCP KTQQTLLHTA
301: LTPNYVLKSL IALWCESNGI ELPKNQDNCR NKKTGKFVSD CDRPAIHALL QKLLDGNPEI QRAAAGELRL LAKRNADNRV CIAEAGAIPR LVELLSSTDP
401: RTQEHAVTAL LNLSINEANK GSIVISGAIP DIVDVLKTGS MEARENAAAT LFSLSVIDEN KVIIGAAGAI PALIDLLCQG TPRGKKDAAT AIFNLAIYQG
501: NKVRAVRAGI VVPLMRFLKD AGGGMVDEAL AILAILASHQ EGKLAIGQAE PFPVLVEVIK TGSPRNRENA AAVLWSLCTG DAQHLKIARE LGAEEALKEL
601: SENGTDRAKR KAGNILELLQ RVEVVVDP

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.