Factsheet for VIT_17s0000g08080.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062931	Potato	cytosol	60.38	60.12
Solyc03g114160.1.1	Tomato	cytosol	59.5	59.24
KRH03317	Soybean	cytosol, plastid	57.29	57.54
KRH54418	Soybean	cytosol, plastid	57.58	57.25
VIT_01s0026g00190.t01	Wine grape	cytosol	56.55	56.22
GSMUA_Achr9P14560_001	Banana	cytosol	38.14	44.27
GSMUA_Achr3P06160_001	Banana	plastid	34.17	40.92
Zm00001d020332_P001	Maize	cytosol	41.53	40.4
KXG35540	Sorghum	plasma membrane	42.42	40.22
Os09t0378700-00	Rice	plasma membrane, plastid	41.97	40.03
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	40.06	39.36
TraesCS2B01G499300.1	Wheat	plasma membrane	39.91	39.33
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	39.62	39.04
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	40.06	38.8
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	39.91	38.66
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	39.62	38.37
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	39.62	38.37
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	39.18	38.33
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	40.21	38.24
Os08t0415600-00	Rice	cytosol	37.26	35.29
VIT_13s0019g04710.t01	Wine grape	cytosol	28.87	31.21
VIT_13s0067g01460.t01	Wine grape	cytosol	31.52	31.1
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.25	30.17
VIT_01s0011g04770.t01	Wine grape	cytosol	28.13	29.89
VIT_00s0524g00030.t01	Wine grape	cytosol	19.44	29.4
VIT_06s0004g04530.t01	Wine grape	cytosol	29.31	29.18
VIT_08s0058g01100.t01	Wine grape	plastid	28.28	28.36
VIT_04s0043g00840.t01	Wine grape	cytosol	19.0	28.35
VIT_03s0038g03660.t01	Wine grape	cytosol	26.21	27.77
VIT_18s0001g14180.t01	Wine grape	cytosol	26.95	26.75
VIT_00s2269g00010.t01	Wine grape	plastid	15.76	23.67
VIT_18s0001g09130.t01	Wine grape	cytosol	13.25	23.2
VIT_07s0005g03520.t01	Wine grape	cytosol	25.63	22.11
VIT_07s0129g00590.t01	Wine grape	cytosol	24.89	19.93

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.25.10.10	EntrezGene:100241707	wikigene:100241707	MapMan:19.2.2.1.5.2.1
Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:ATPase_a/bsu_AS	InterPro:Armadillo	ProteinID:CCB42995
ProteinID:CCB42995.1	UniProt:F6GSS2	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100241707	wikigene:LOC100241707	PFAM:PF00514	PFAM:PF04564
ScanProsite:PS00152	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF161	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00019852DC	InterPro:Ubox_domain	ArrayExpress:VIT_17s0000g08080
EnsemblPlantsGene:VIT_17s0000g08080	EnsemblPlants:VIT_17s0000g08080.t01	unigene:Vvi.10487	RefSeq:XP_002279989	RefSeq:XP_002279989.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GSS2]

Coordinates

chr17:+:9075799..9078072

Molecular Weight (calculated)

75211.9 Da

IEP (calculated)

8.286

GRAVY (calculated)

0.053

Length

679 amino acids

Sequence
(BLAST)

001: MFQSFNRSDR RILSFPAVHP CESISPVTLL GSLIALSTSI LNYQSKSFPT QKRNARETLR QIGILLIFFE EIQDRRSVLP DSVVLCFSEL HLAFQKIQFL
101: LEDCSREGAR LWILMKSQFV ATQFRVLIRA FATALEVLPL NCIDLTSEVK ELVELVAKQA RKARFDLDAN DECAAKDVIW ILNQFEKRIE PDMSVVKRVL
201: DHLEIRSWSE CNKEIRFMEE LSLECDEREV TLLKSLMGLM SYCRGVMFEE IESSGTDQTE GRCSVEMLSC LNPEDFRCPI SLELMTDPVT VSTGQTYDRS
301: SIQKWLRAGN IICPKTGEKL INKELVPNSA LRKLIQQFCE DHGVSLAKTE TQNSNAARTI AVNSPAAAEA TRFLSKFLAR RLVSGTGEQK NKAAYEIRLL
401: AKSSVFNRCC LIEAGTVPPL LNLLSSTDAP TQENAIAALL KLSKHSKGKK VIMDSGGLKL ILKVLKVGPR LESRQIAAAT LFYLASVDKY RSLIGETPEA
501: IPSLVELIKT GTTIGKMHAV VAIFGLLLCR ENCPRVLAAG TVPLLVHLLA SSVKEDLATE SLAALAKLSE HIDGSLAILR ASGLPLITKI LQSSPSRTGK
601: EYCVSILLSL CINGSIEVTV DLAKDPTLMT SLYSLVTEGT SHGSKKACSL LKIIHKFLET DSSGLRSSQV PQERFLRVR

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.