Factsheet for VIT_13s0067g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73275	Soybean	cytosol	54.51	73.67
Solyc06g051090.1.1	Tomato	cytosol	58.72	71.89
PGSC0003DMT400077205	Potato	cytosol	70.49	71.43
VIT_13s0019g04710.t01	Wine grape	cytosol	35.32	38.69
VIT_01s0011g04770.t01	Wine grape	cytosol	33.72	36.31
VIT_06s0004g04530.t01	Wine grape	cytosol	35.17	35.48
VIT_08s0058g01100.t01	Wine grape	plastid	34.45	35.01
VIT_03s0038g03660.t01	Wine grape	cytosol	31.98	34.32
VIT_00s0524g00030.t01	Wine grape	cytosol	22.09	33.85
VIT_04s0043g00840.t01	Wine grape	cytosol	22.24	33.63
VIT_10s0003g01730.t01	Wine grape	mitochondrion	35.47	33.61
VIT_18s0001g09130.t01	Wine grape	cytosol	18.17	32.22
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	31.1	31.52
VIT_18s0001g14180.t01	Wine grape	cytosol	30.81	30.99
VIT_01s0026g00190.t01	Wine grape	cytosol	30.09	30.31
VIT_00s2269g00010.t01	Wine grape	plastid	19.48	29.65
VIT_07s0005g03520.t01	Wine grape	cytosol	30.52	26.68
VIT_07s0129g00590.t01	Wine grape	cytosol	30.23	24.53

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100246680	wikigene:100246680	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM429121
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CAN60363	ProteinID:CAN60363.1	ProteinID:CCB49848
ProteinID:CCB49848.1	UniProt:F6HCB0	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EntrezGene:LOC100246680	wikigene:LOC100246680	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF132	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00015CA53B	InterPro:Ubox_domain	ArrayExpress:VIT_13s0067g01460	EnsemblPlantsGene:VIT_13s0067g01460	EnsemblPlants:VIT_13s0067g01460.t01	RefSeq:XP_002272996
RefSeq:XP_002272996.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HCB0]

Coordinates

chr13:+:821719..823785

Molecular Weight (calculated)

75368.9 Da

IEP (calculated)

7.538

GRAVY (calculated)

0.028

Length

688 amino acids

Sequence
(BLAST)

001: MDVALPTLMV SSGFLPTGSL LESLIHISNE VASMERLPVI QVRNISTMIR RIKLLSSLFE EIHEMNTPLP PSSILCLTEL FSVIRRVKSF IQGCKDASSL
101: WSLVQTELIS SQFHVVVKEM GRALDILPLS LLNITADIRE QVELLHKQAK RVDLFVDPRE LQRREELLQV MATNNEKNAK NKALVDFREV KEILSSIGLR
201: SPLDYDEEIS KLEAEAQKQA GTGGLIVVSN INNLISLVLY SKSMIFSEEH NEKTDEAFKK RSASFRMNND HSSSSQSAIL NIPDEFRCPI SLDLMRDPVI
301: VASGHTYDRN SIAQWINTGH NTCPKSGMKL IHMALIPNYA LKSLVHQWCR ENNIQLIEST SSSSSDLGRS NSMRKSCEKA VDHISATKTA MDAVKMTAEF
401: LVGKLATGSP EIQRQAAYEL RLLAKTGMDN RRIIAEAGAI PFLVTLLSSH DPRIQENAVT ALLNLSIFDN NKILIMAAGA IDNIVDVLQS GKTMEARENA
501: AAAIFSLSMI DDCKVTIGAH PRAMPALVAL LREGTSAGKR DAATALFNLV VYSANKGSAV VAGAVPLLIE LLMDDKAGIT DDALAVLALL LGCPDGLEEI
601: RKSRILVPLL IDLLRFGSPK GKENSITLLL GLCKDGGEEV ARRLLLNPRS IPSLQSLVAD GSLKARRKAD ALLRLLNRCC SQSHSTVG

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.