Factsheet for Solyc06g051090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077205	Potato	cytosol	93.24	77.17
VIT_13s0067g01460.t01	Wine grape	cytosol	71.89	58.72
KRH73275	Soybean	cytosol	45.73	50.49
Solyc12g088360.1.1	Tomato	cytosol	18.68	38.18
Solyc04g077850.2.1	Tomato	cytosol	21.35	33.71
Solyc11g008390.1.1	Tomato	cytosol	35.94	32.37
Solyc11g066040.1.1	Tomato	cytosol	37.19	31.52
Solyc06g076040.2.1	Tomato	cytosol	36.48	31.01
Solyc09g056450.2.1	Tomato	cytosol	23.84	29.84
Solyc12g094610.1.1	Tomato	cytosol	28.11	29.42
Solyc04g007640.2.1	Tomato	cytosol	33.81	29.37
Solyc05g008230.2.1	Tomato	cytosol	33.45	28.92
Solyc11g012440.1.1	Tomato	cytosol, plastid	23.49	28.76
Solyc04g014810.2.1	Tomato	plastid	22.78	28.38
Solyc04g050780.1.1	Tomato	cytosol	21.17	27.61
Solyc04g082440.2.1	Tomato	cytosol	30.96	26.81
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	34.52	26.8
Solyc04g050770.1.1	Tomato	cytosol	20.64	26.19
Solyc03g114160.1.1	Tomato	cytosol	31.32	25.81
Solyc09g018230.1.1	Tomato	plastid	31.32	25.58
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	30.07	24.67
Solyc09g025270.2.1	Tomato	cytosol	30.78	23.1
Solyc01g014230.2.1	Tomato	cytosol	32.38	22.44
Solyc12g100000.1.1	Tomato	cytosol, plastid	32.56	22.34

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4C5Q2	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF132	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g051090.1	EnsemblPlants:Solyc06g051090.1.1	UniParc:UPI0002766ECC	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4C5Q2]

Coordinates

chr6:-:34208643..34210331

Molecular Weight (calculated)

61400.8 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.045

Length

562 amino acids

Sequence
(BLAST)

001: MDNALDILPL RMLNVTVDTK EQVELLHKQA KRADLFIDPR DIQKRKEILH LMATNCDRKS KNKGLIDFET VKQSLNSIGL RSSLDYEEEI AKLKTQAEKQ
101: AGTGGLIAVS NINSLISLMS LSKTAILEEE YLMNSQNLKQ TTSINVLPDQ SSSCYSLVSD VPDELRCPIS LDLIRDPVIV ASGHTYDRNS IAQWINSGHH
201: TCPRSGQKLI HMALIPNYAL KSLIQQWCQD NNITITEPKS TPSDSESSTS KIMKYDKAID YISATKASMD AVKMTAEFLV GKLATGSPDI QRKAAYELRL
301: LAKSGMDNRR IIAESGAIPF LTTLLDSRDP RIQENAVTAL LNLSIHENNK ILIMSAGAID SLIRVLQSGQ TMEARGNAAA AIFSLSVIDE YKVIIGARPK
401: AIPALVGLLK DGTTAGKRDA AIALFNLAVY GANRQCIVLA GAVPLLIDLL MDDKAGITDD SLAVLSLILG CNEGLQALRK SRILVPLLVD LLRFGSSKGK
501: DHSITLLLGL CKDTGEEIVG RLLMNPRSIP SLQSLSADGS LRARRKADAL LRLLNRCCFQ SQ

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.