Factsheet for Solyc05g005670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082693	Potato	cytosol	35.33	99.18
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	63.65	95.82
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	77.96	95.36
VIT_01s0026g00190.t01	Wine grape	cytosol	57.96	58.13
KRH69547	Soybean	cytosol, plastid	49.93	47.97
Solyc03g114160.1.1	Tomato	cytosol	45.4	45.6
CDX93411	Canola	mitochondrion	42.92	42.12
Bra019924.1-P	Field mustard	mitochondrion	42.34	41.73
AT1G60190.1	Thale cress	cytosol, plastid	41.46	41.4
CDY24520	Canola	cytosol	40.73	41.39
CDY55050	Canola	cytosol	42.04	41.38
AT1G10560.1	Thale cress	cytosol	42.04	41.32
Bra031521.1-P	Field mustard	cytosol	40.73	41.21
CDY54132	Canola	cytosol	40.29	40.59
CDY04344	Canola	cytosol	17.96	38.56
GSMUA_Achr9P14560_001	Banana	cytosol	32.55	38.12
GSMUA_Achr3P06160_001	Banana	plastid	31.09	37.57
CDY04342	Canola	cytosol	17.96	36.94
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	36.2	35.89
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	36.06	35.85
TraesCS2B01G499300.1	Wheat	plasma membrane	35.91	35.7
Os09t0378700-00	Rice	plasma membrane, plastid	36.93	35.53
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	35.47	35.01
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	35.77	34.95
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	35.62	34.81
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	35.47	34.66
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.18	34.38
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	34.89	33.47
KXG35540	Sorghum	plasma membrane	34.45	32.96
Zm00001d020332_P001	Maize	cytosol	33.43	32.81
Os08t0415600-00	Rice	cytosol	33.72	32.22
Solyc12g088360.1.1	Tomato	cytosol	12.12	30.18
Solyc06g051090.1.1	Tomato	cytosol	24.67	30.07
Solyc11g008390.1.1	Tomato	cytosol	26.57	29.17
Solyc11g066040.1.1	Tomato	cytosol	28.03	28.96
Solyc06g076040.2.1	Tomato	cytosol	27.88	28.9
Solyc12g094610.1.1	Tomato	cytosol	21.9	27.93
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	29.34	27.76
Solyc09g056450.2.1	Tomato	cytosol	17.81	27.17
Solyc04g077850.2.1	Tomato	cytosol	13.87	26.69
Solyc04g007640.2.1	Tomato	cytosol	24.09	25.5
Solyc09g018230.1.1	Tomato	plastid	25.55	25.44
Solyc04g050770.1.1	Tomato	cytosol	16.35	25.28
Solyc04g050780.1.1	Tomato	cytosol	15.77	25.06
Solyc04g082440.2.1	Tomato	cytosol	23.36	24.65
Solyc05g008230.2.1	Tomato	cytosol	22.92	24.15
Solyc11g012440.1.1	Tomato	cytosol, plastid	15.62	23.31
Solyc04g014810.2.1	Tomato	plastid	15.04	22.84
Solyc09g025270.2.1	Tomato	cytosol	22.34	20.43
Solyc01g014230.2.1	Tomato	cytosol	21.9	18.5
Solyc12g100000.1.1	Tomato	cytosol, plastid	22.04	18.44

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BW95	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g005670.1	EnsemblPlants:Solyc05g005670.1.1	UniParc:UPI0002766E1F	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BW95]

Coordinates

chr5:-:498016..500073

Molecular Weight (calculated)

76078.9 Da

IEP (calculated)

7.725

GRAVY (calculated)

0.111

Length

685 amino acids

Sequence
(BLAST)

001: MINKSNEFIR RILNFPAIRP SETVCLSSLV ASLIQLGQTI CEFKSRTFYT NKKNVRNSIR LIEDILIVLK EIPNGASRFA SSSIVSLSEI HFIFQKFHFL
101: LNDCSREDSR IWILAKSEDV SCQFKMLARA VAVALDVLPL EEMDVSVEGR EVVEFVRNQA VKLKFEVEMD DGRMQLNVLK ILDLLEDGIV PESCDLKRVL
201: DYLGIKRWSA CNREVKFLDN EMLLEGNTEE KRDMGILSSL MGFMIYCRGT LFEVLDNGAS RQINGGSTNV DQVIRFLNLD DFRCPITLEI MSDPVTIASG
301: HTYDRSSILK WFRAGNSTCP KTGERLTSID LVPNLALKVL IKQYFSANGI PFVETGTRNR DAVRFVGSST VANEQAMKLL ASFLVGRLVA GTMEQQNKAA
401: FEIRLLTKTS IFNRSCLVEA GAIPPLLNLV TSRDSSCQEN VMATLLNLSK NSKCKSTIVG NGGLFLILDV LKGGLKMEAR QHAAGTLFYL TSVEEYRKMM
501: GDNPEFIPSL LELLRNGTDR GKKNALVTIF GLLMRPENHW RVIAAGLVPL VVNLLKSFER EDLITDSLAV LSTLSERLDG AMAVLYAGAL PIIVNVLSSC
601: NSRASKEYCV SLLLALCING GADAVPVLVK NSSLMGPLYS LLAEGNSKAS KKASTLIRIL HEYNEKTSSG LITPVFIEDQ FINVW

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.