Factsheet for Solyc12g100000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046295	Potato	cytosol	93.89	93.67
Solyc01g014230.2.1	Tomato	cytosol	77.53	78.3
KRH17146	Soybean	cytosol	22.22	76.47
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	23.57	75.98
GSMUA_Achr9P12570_001	Banana	cytosol	25.4	69.33
GSMUA_Achr4P01530_001	Banana	plasma membrane	47.37	63.5
VIT_07s0129g00590.t01	Wine grape	cytosol	64.59	62.38
KRH30135	Soybean	cytosol	60.81	59.43
KRG98177	Soybean	cytosol	60.44	58.86
CDX76873	Canola	cytosol, plastid	53.11	58.23
TraesCS3A01G390200.1	Wheat	cytosol	31.01	57.86
TraesCS3B01G422200.1	Wheat	cytosol	31.14	57.69
HORVU3Hr1G081380.1	Barley	cytosol	30.89	57.24
TraesCS3D01G382500.1	Wheat	cytosol	30.77	57.01
AT2G23140.1	Thale cress	cytosol	57.63	56.94
KRH72794	Soybean	plasma membrane	55.19	55.6
Solyc12g088360.1.1	Tomato	cytosol	18.19	54.18
CDY18649	Canola	cytosol, plastid	46.03	52.95
CDX81323	Canola	cytosol, plastid	46.52	52.7
AT5G67340.1	Thale cress	cytosol	45.3	52.48
Bra037117.1-P	Field mustard	cytosol, plastid	46.52	51.91
Os08t0110500-01	Rice	plasma membrane	51.4	51.09
TraesCS3D01G527900.1	Wheat	cytosol	50.06	49.34
TraesCS3B01G591000.1	Wheat	cytosol	50.06	49.34
TraesCS3A01G521300.1	Wheat	cytosol	49.82	49.1
HORVU3Hr1G113910.3	Barley	cytosol	49.82	48.69
Bra032180.1-P	Field mustard	cytosol	34.43	48.29
CDY57440	Canola	cytosol	38.83	48.25
Bra012155.1-P	Field mustard	cytosol	38.83	48.25
Zm00001d035040_P007	Maize	mitochondrion	51.28	48.17
CDY12838	Canola	cytosol	40.42	47.35
CDY38931	Canola	cytosol	35.04	46.67
EES01872	Sorghum	cytosol	45.18	45.96
Zm00001d049708_P007	Maize	cytosol	48.72	45.24
Solyc04g077850.2.1	Tomato	cytosol	19.54	44.94
Os01t0884400-01	Rice	plasma membrane	45.79	44.75
TraesCS3B01G443500.1	Wheat	cytosol	27.96	43.29
TraesCS3A01G410100.1	Wheat	cytosol	27.84	43.1
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	52.87	41.92
EES14396	Sorghum	cytosol	51.53	41.91
Solyc09g025270.2.1	Tomato	cytosol	38.1	41.66
TraesCS3A01G410000.1	Wheat	cytosol	31.14	40.22
Zm00001d042608_P002	Maize	cytosol	45.05	39.89
Solyc11g008390.1.1	Tomato	cytosol	28.69	37.66
Solyc04g014810.2.1	Tomato	plastid	19.29	35.03
Solyc11g066040.1.1	Tomato	cytosol	28.33	34.99
Solyc11g012440.1.1	Tomato	cytosol, plastid	19.41	34.64
Solyc06g076040.2.1	Tomato	cytosol	27.59	34.19
Solyc09g056450.2.1	Tomato	cytosol	18.68	34.08
Solyc12g094610.1.1	Tomato	cytosol	22.22	33.89
Solyc04g007640.2.1	Tomato	cytosol	26.13	33.08
Solyc06g051090.1.1	Tomato	cytosol	22.34	32.56
Solyc05g008230.2.1	Tomato	cytosol	25.03	31.54
Solyc04g082440.2.1	Tomato	cytosol	23.93	30.2
Solyc04g050770.1.1	Tomato	cytosol	16.12	29.8
Solyc04g050780.1.1	Tomato	cytosol	15.51	29.47
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	23.32	26.38
Solyc09g018230.1.1	Tomato	plastid	21.98	26.16
Solyc03g114160.1.1	Tomato	cytosol	20.02	24.05
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	18.44	22.04

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4DI21	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc12g100000.1	EnsemblPlants:Solyc12g100000.1.1	UniParc:UPI000276AB61
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4DI21]

Coordinates

chr12:+:66914193..66917065

Molecular Weight (calculated)

89295.4 Da

IEP (calculated)

6.056

GRAVY (calculated)

-0.098

Length

819 amino acids

Sequence
(BLAST)

001: MEISLLKVLL SSISQFFHLS SSENITDILV QRYYCKAEDL LKILKPILEA IVDVEAASSE MLQKAFAGLA QSVDELRELC ETWQPLGSNV YFVLQVEPLI
101: VKTRTCSLEF LELLKTSHEC LPADTTLTSL EHCILKIKYV DYELISMTIT KSIKAQMEGL GANSDSFAKL ADCLRLKSNQ ELLIELVALE KLKENAEQAE
201: KTEEVEYIEQ IIALVSHMHD CFITMKQSQT CRPVTIPPDF CCPLSLELMT DPVIVATGQT YERAFIREWI DLGLTVCPKT RQMLGHTTLI PNYTVKALIA
301: NWCESNNVKL PDPTKSLSLN QASSLLAHAY SGMPRDTQGI PLLRGNHSSS PDSSRSLSSP RKICSSSMTQ REGLSPSHPH SSLDDSLPRV ASNMLALDVV
401: RISIKTSEER MAHSGEINSH GHCMLAANKH SLVGHNRTTS APSTLSNSNF SPTIPGDGNE VFSMSAAAAT DACDVSESQP AAPLSVLQGE PEFPSMPETR
501: VRNQSIWLRP SERFPRIVSS ATVERRADLL ELEEQVRKLV QDLSSNSIDV QRDATAELRL LAKHNMDNRI VMANCGSINL LVNLLHSEDM NVQENAVTTL
601: LNLSINDNNK CLIANADAIE PLIHVLHTGS GEAKENSAAT LFSLSVIEDN KMKIGRSGAI KPLVDLLGNG SPRGKKDAAT ALFNLSILHE NKGRIVQAGA
701: VKFLVELMDP AAGMVDKAVA VLSNLATIHE GRAAIGQEGG IPLLVEVVEL GSARGRENAA AALLQLCTNS SRFCNMVLQE GAVPPLVALS QSGTARAREK
801: AQGLLSYFRN QRHGNAGRG

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.