Factsheet for Solyc06g076040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078166	Potato	cytosol	96.67	96.67
Solyc11g066040.1.1	Tomato	cytosol	78.37	78.13
KRH29807	Soybean	cytosol	71.41	71.41
KRH24807	Soybean	cytosol	71.41	71.3
VIT_06s0004g04530.t01	Wine grape	cytosol	72.62	70.38
AT3G46510.1	Thale cress	cytosol	66.11	66.21
CDX68379	Canola	cytosol	65.2	65.5
CDX68380	Canola	cytosol	52.65	65.41
CDX86080	Canola	cytosol	64.9	65.4
Bra033820.1-P	Field mustard	cytosol	65.05	65.35
Bra018212.1-P	Field mustard	cytosol	64.15	65.13
CDX99112	Canola	cytosol	64.45	65.04
AT2G28830.1	Thale cress	endoplasmic reticulum	54.77	62.2
CDY31736	Canola	cytosol	58.55	60.28
CDX77213	Canola	cytosol	58.55	60.19
Bra035665.1-P	Field mustard	cytosol	59.0	59.82
Os12t0570000-01	Rice	cytosol	46.14	58.99
GSMUA_Achr10P...	Banana	cytosol	54.16	57.19
Zm00001d030732_P001	Maize	cytosol	56.28	55.94
GSMUA_Achr5P28670_001	Banana	cytosol	47.66	55.26
OQU79384	Sorghum	cytosol	55.37	54.95
Solyc11g008390.1.1	Tomato	cytosol	51.74	54.81
HORVU5Hr1G021270.1	Barley	cytosol	56.43	54.69
TraesCS4A01G097700.1	Wheat	cytosol	59.15	54.69
TraesCS5A01G078400.1	Wheat	cytosol	56.43	54.53
Zm00001d041548_P002	Maize	cytosol	55.22	54.32
TraesCS5B01G087500.1	Wheat	cytosol	55.98	54.25
TraesCS5D01G093700.1	Wheat	cytosol	56.13	54.24
HORVU5Hr1G021280.1	Barley	cytosol	56.43	54.22
GSMUA_Achr5P07140_001	Banana	cytosol	51.29	53.98
GSMUA_Achr6P34170_001	Banana	cytosol	53.71	53.46
Zm00001d028623_P001	Maize	cytosol	58.4	53.17
Os03t0275900-01	Rice	cytosol	57.64	52.48
OQU92820	Sorghum	cytosol	58.09	51.27
TraesCS4B01G206900.1	Wheat	plastid	59.0	50.91
HORVU4Hr1G059610.2	Barley	cytosol	59.15	50.65
TraesCS4D01G207700.2	Wheat	plastid	58.85	50.06
GSMUA_Achr10P...	Banana	cytosol	57.34	43.87
Solyc12g094610.1.1	Tomato	cytosol	35.4	43.58
Solyc12g088360.1.1	Tomato	cytosol	17.85	42.91
Solyc04g007640.2.1	Tomato	cytosol	41.75	42.66
Solyc04g082440.2.1	Tomato	cytosol	40.85	41.6
Solyc05g008230.2.1	Tomato	cytosol	40.24	40.92
Solyc09g056450.2.1	Tomato	cytosol	26.32	38.75
Solyc06g051090.1.1	Tomato	cytosol	31.01	36.48
Solyc04g077850.2.1	Tomato	cytosol	19.36	35.96
Solyc04g050770.1.1	Tomato	cytosol	21.79	32.51
Solyc04g050780.1.1	Tomato	cytosol	21.03	32.25
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	33.13	30.25
Solyc04g014810.2.1	Tomato	plastid	20.27	29.71
Solyc11g012440.1.1	Tomato	cytosol, plastid	20.57	29.63
Solyc09g018230.1.1	Tomato	plastid	30.11	28.92
Solyc09g025270.2.1	Tomato	cytosol	32.68	28.84
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	28.9	27.88
Solyc01g014230.2.1	Tomato	cytosol	34.19	27.87
Solyc12g100000.1.1	Tomato	cytosol, plastid	34.19	27.59
Solyc03g114160.1.1	Tomato	cytosol	28.14	27.27

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:K4C9W5
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g076040.2	EnsemblPlants:Solyc06g076040.2.1
UniParc:UPI0002766F25	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4C9W5]

Coordinates

chr6:-:47209976..47215110

Molecular Weight (calculated)

72079.7 Da

IEP (calculated)

5.373

GRAVY (calculated)

-0.196

Length

661 amino acids

Sequence
(BLAST)

001: MEEGRGVLVE KLIEVVNEIA AISDYRTSVK KEYCNLGRRL KLLIPMFEEI RDIKEPVPEN SMIALVSLKE ALESTKELLK FGSQGSKIYL VLEREQIMNK
101: FHQVTTQLEQ ALGGVHYQEL DISDEVKEQV ELVLSQFQRA KGRVDTPDAE LHEDLLSLYS QSNDPAIDPA VLRKLVKKLQ LTGLYDLTQE SCALHDMVTA
201: TGEDPEERIE KMSLVLRKIK GFVLTETPEI DSSSREKSST CSGQVSIETT HKAPVIPDDF RCPISLELMK DPVIVSSGQT YERSSIEKWL EAGHSTCPKT
301: QQVLTSNVIT PNYVLRSLIA QWCEMNGVES PKRPGSSPNK SASACTPAEH STIENLLRKL TSGSPEDRLS ATGEIRLLAK RNADNRVAIA EAGAIPLLVD
401: LLSTPDSRIQ EHAVTALLNL SICEDNKRSI VTSGAVPGIV HVLKKGSMEA RENAAAALFS LSVIDENKVI IGTFGAIPPL VTLLSDGTQR GKKDAATALF
501: NLCIYQGNKG KAVRAGVVVT LMGLLTEPQG SMIDEALAIL AILSSHPEGK TTIGAAGAVP VLVNVITSGS PRNKENAAAV LVHLCSGDQH YLVDVQELGI
601: MGPLLDLVQN GTERGRRKAT QLLERINRYA EQQKQAQTEP EAPIHNQLSE SPPSSTNVLE C

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.