Factsheet for GSMUA_Achr5P07140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28670_001	Banana	cytosol	59.08	65.09
GSMUA_Achr10P...	Banana	cytosol	63.38	63.58
GSMUA_Achr10P...	Banana	cytosol	77.07	56.02
GSMUA_Achr6P34170_001	Banana	cytosol	58.28	55.12
TraesCS4A01G097700.1	Wheat	cytosol	61.62	54.13
Os03t0275900-01	Rice	cytosol	61.94	53.58
VIT_06s0004g04530.t01	Wine grape	cytosol	58.12	53.52
KRH29807	Soybean	cytosol	56.05	53.25
KRH24807	Soybean	cytosol	55.57	52.72
Solyc11g066040.1.1	Tomato	cytosol	55.57	52.64
PGSC0003DMT400001049	Potato	cytosol	55.1	52.11
Zm00001d028623_P001	Maize	cytosol	60.19	52.07
Solyc06g076040.2.1	Tomato	cytosol	53.98	51.29
PGSC0003DMT400078166	Potato	cytosol	53.34	50.68
OQU92820	Sorghum	cytosol	60.19	50.47
Bra018212.1-P	Field mustard	cytosol	52.07	50.23
AT3G46510.1	Thale cress	cytosol	52.55	50.0
TraesCS4B01G206900.1	Wheat	plastid	60.99	50.0
HORVU4Hr1G059610.2	Barley	cytosol	61.47	50.0
CDX86080	Canola	cytosol	52.07	49.85
TraesCS4D01G207700.2	Wheat	plastid	61.62	49.81
CDX99112	Canola	cytosol	51.75	49.62
CDX68379	Canola	cytosol	51.75	49.39
Bra033820.1-P	Field mustard	cytosol	51.59	49.24
CDX68380	Canola	cytosol	40.61	47.93
CDX77213	Canola	cytosol	49.04	47.9
CDY31736	Canola	cytosol	48.57	47.51
AT2G28830.1	Thale cress	endoplasmic reticulum	43.95	47.42
Bra035665.1-P	Field mustard	cytosol	48.89	47.09
GSMUA_Achr3P00280_001	Banana	cytosol	43.15	44.94
GSMUA_Achr1P24290_001	Banana	cytosol	41.24	42.39
GSMUA_Achr4P04900_001	Banana	cytosol	31.53	37.5
GSMUA_Achr4P05030_001	Banana	cytosol	31.21	37.4
KRG99865	Soybean	cytosol	35.35	35.98
GSMUA_Achr9P15600_001	Banana	cytosol	32.8	30.47
GSMUA_Achr6P06560_001	Banana	cytosol	17.04	28.69
GSMUA_Achr8P25140_001	Banana	plastid	19.11	28.57
GSMUA_Achr9P12570_001	Banana	cytosol	13.22	27.67
GSMUA_Achr10P...	Banana	cytosol	16.24	27.27
GSMUA_Achr9P01670_001	Banana	cytosol	20.22	27.25
GSMUA_Achr9P28820_001	Banana	mitochondrion	25.96	27.21
GSMUA_Achr4P01530_001	Banana	plasma membrane	26.27	27.0
GSMUA_Achr10P...	Banana	mitochondrion	19.43	26.99
GSMUA_Achr2P15530_001	Banana	mitochondrion	27.71	26.36
GSMUA_Achr7P09440_001	Banana	mitochondrion	26.59	26.18
GSMUA_Achr6P36530_001	Banana	cytosol	26.27	25.0
GSMUA_Achr4P03430_001	Banana	cytosol	9.71	22.68
GSMUA_Achr7P22130_001	Banana	cytosol	22.45	22.27
GSMUA_Achr6P07710_001	Banana	cytosol	12.42	21.85
GSMUA_Achr5P21360_001	Banana	cytosol	26.27	21.74
GSMUA_Achr4P00200_001	Banana	plastid	24.36	21.73
GSMUA_Achr3P18890_001	Banana	cytosol	11.78	20.61
GSMUA_Achr10P...	Banana	cytosol	12.1	20.43
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	12.9	19.95
GSMUA_Achr4P14130_001	Banana	cytosol	10.99	19.88
GSMUA_Achr9P14560_001	Banana	cytosol	18.15	19.49
GSMUA_Achr4P06990_001	Banana	plastid	11.62	18.11
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	11.78	17.87
GSMUA_Achr5P16030_001	Banana	cytosol	12.9	17.2
GSMUA_Achr3P06160_001	Banana	plastid	14.81	16.4
GSMUA_Achr3P29830_001	Banana	cytosol	10.83	16.35
GSMUA_Achr4P11070_001	Banana	cytosol	10.83	16.11
GSMUA_Achr1P22790_001	Banana	mitochondrion	10.67	14.79

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005488
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G07140_001	EnsemblPlants:GSMUA_Achr5P07140_001
EnsemblPlants:GSMUA_Achr5T07140_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:M0SWE3
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF142	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00029535FB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

U-box domain-containing protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07140_001]

Coordinates

chr5:+:5158762..5162462

Molecular Weight (calculated)

69153.6 Da

IEP (calculated)

5.941

GRAVY (calculated)

-0.260

Length

628 amino acids

Sequence
(BLAST)

001: MEEGENEAAV LAAAAAGSVV ESLMAAVEEI AAISDYRNAY KKQFCNLSRR IKLLAPMFEE LKESKDPIPP RAVRALEKLN GALDSAKDLL RLGSEGSKIF
101: LVLERDRIME RFQEITSQLE VALNEISFNE IDISDEVKEQ VELVHAQFKR AKERIDTTDP ELYADLSSVC HMNADARIDS PILKRLAEKL QMMTISDLKQ
201: ESLALHEMVD ASGDPGEVIE KMSMLLKRIK DFVQTQKPEM GTPMSAMVIP SHGTSKTPVV PDDYRCPISL ELMGDPVIVS TGQTYEREFI KKWLEAGHNT
301: CPKTQQRLSS TSLTPNYVLR SLIAQWCEAN GMDPPKLPAR TGKPLSVCSA GEHAKVVDLL HKLSSQNLED QRSAAGELRL LAKRNTDNRI CIAEAVHVLK
401: RGSMEARENA AATLFSLSVV DRNKGNKGKA VRAGVIHTLM GLLTDPEGAM MDEALAIMAI LSSHPDGKAA IRAVEALPML VKVIRSGSPR NKENAAAVLV
501: HLCNGEQQQQ HLAELQEQGM MVPLQEMVES GTNRGKRKAA QLLEQMTRFL ELQKKAEAQA QAQAQAQAWT QAPVDQSMDT ASSAFTGNMS QVSKELFIIL
601: CHGVDVRLSP SIFMEESHLL NMAPQSTL

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.