Factsheet for GSMUA_Achr5P21360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36530_001	Banana	cytosol	66.8	76.82
GSMUA_Achr9P12570_001	Banana	cytosol	23.19	58.67
VIT_07s0005g03520.t01	Wine grape	cytosol	56.52	54.51
GSMUA_Achr4P01530_001	Banana	plasma membrane	42.16	52.37
PGSC0003DMT400026700	Potato	cytosol	49.93	48.71
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.78	48.28
Solyc09g025270.2.1	Tomato	cytosol	47.56	48.2
GSMUA_Achr4P03430_001	Banana	cytosol	17.0	47.96
CDX78262	Canola	cytosol	43.48	47.01
Bra014787.1-P	Field mustard	cytosol	45.59	46.88
CDX73449	Canola	cytosol	43.35	46.73
CDY02891	Canola	cytosol	45.32	46.68
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	45.32	46.61
Bra007097.1-P	Field mustard	cytosol	42.95	46.44
AT3G54790.1	Thale cress	cytosol	45.72	45.66
KRH67390	Soybean	cytosol, plastid	49.67	44.04
GSMUA_Achr6P07710_001	Banana	cytosol	19.5	41.46
KRH32190	Soybean	cytosol	35.31	40.42
GSMUA_Achr4P14130_001	Banana	cytosol	18.18	39.77
GSMUA_Achr3P18890_001	Banana	cytosol	18.71	39.55
GSMUA_Achr10P...	Banana	cytosol	19.37	39.52
GSMUA_Achr6P06560_001	Banana	cytosol	19.24	39.14
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	19.89	37.19
GSMUA_Achr10P...	Banana	cytosol	18.31	37.17
GSMUA_Achr9P01670_001	Banana	cytosol	22.53	36.7
GSMUA_Achr4P06990_001	Banana	plastid	19.24	36.23
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	19.1	35.02
GSMUA_Achr3P29830_001	Banana	cytosol	18.84	34.38
GSMUA_Achr4P11070_001	Banana	cytosol	19.1	34.36
GSMUA_Achr3P00280_001	Banana	cytosol	26.22	33.0
GSMUA_Achr1P22790_001	Banana	mitochondrion	19.63	32.89
GSMUA_Achr10P...	Banana	cytosol	25.69	31.15
GSMUA_Achr1P24290_001	Banana	cytosol	24.64	30.61
GSMUA_Achr5P16030_001	Banana	cytosol	18.97	30.57
GSMUA_Achr8P25140_001	Banana	plastid	16.86	30.48
GSMUA_Achr6P34170_001	Banana	cytosol	26.22	29.97
GSMUA_Achr4P05030_001	Banana	cytosol	20.03	29.01
GSMUA_Achr5P28670_001	Banana	cytosol	21.74	28.95
GSMUA_Achr4P04900_001	Banana	cytosol	19.76	28.41
GSMUA_Achr5P07140_001	Banana	cytosol	21.74	26.27
GSMUA_Achr9P15600_001	Banana	cytosol	22.92	25.74
GSMUA_Achr2P15530_001	Banana	mitochondrion	21.34	24.55
GSMUA_Achr4P00200_001	Banana	plastid	21.87	23.58
GSMUA_Achr7P22130_001	Banana	cytosol	18.97	22.75
GSMUA_Achr9P28820_001	Banana	mitochondrion	17.65	22.37
GSMUA_Achr7P09440_001	Banana	mitochondrion	18.71	22.26
GSMUA_Achr10P...	Banana	cytosol	25.3	22.22
GSMUA_Achr9P14560_001	Banana	cytosol	16.47	21.37
GSMUA_Achr3P06160_001	Banana	plastid	15.41	20.63
GSMUA_Achr10P...	Banana	mitochondrion	11.33	19.03

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G21360_001	EnsemblPlants:GSMUA_Achr5P21360_001	EnsemblPlants:GSMUA_Achr5T21360_001	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0T0G5	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000295D93A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative U-box domain-containing protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G21360_001]

Coordinates

chr5:+:23436476..23440174

Molecular Weight (calculated)

83625.7 Da

IEP (calculated)

6.474

GRAVY (calculated)

-0.137

Length

759 amino acids

Sequence
(BLAST)

001: MDGEIIGGLI NSISRFIHLV ACQTIKSAAI KDFRKIVGIL KLLKPVLDEA LDSELPLDGH LVKEFEELDV AVNDARELLE KAPQRMSKIY SVLQSEPMLL
101: RVQKSASEIC HFLSALQSSP FSASIQHCMQ EVQYMEQDPI SELIDHALKD LKENTIPSLD DVIKIMDTLS LASNQELLME SIALEKEKAK AELKSKTEII
201: DHINWITVLV SHICYCMEKL EQFGFVNGVP VPLHFRCPLS LQLMLDPVIL ASGQTYERSF IQKWLDNGLR FCPKTRQTLV HTNLIPNYTV KALIANWCEK
301: NNIKLDVSAQ PENISYPYSS IAAFEDIQHE DDHRHSTSRS SLESYDKTEL HKVKISSGCG QQDCSNYSHH QTMADKVNLQ GDALVEKNSC HSHSESISSV
401: ISSIEVMSKF DEKVSLPGDI TYPSCLPLNK ELSSSSWLCS NQHFGSKNGH GIDDKGQPLL QSSRLDDLTT APHVQNIIDD LKSEAPELQT AAASKLRLLA
501: KNNMENRVLI GKCGAIPSLV SLLYSNVKKV QENAVTALLN LSINDDNKVL IAEAGAVEPL IHVLECGTTE AKENSAAAFF SLSVMDEYKA KIGRSGAVKA
601: LVYLLETGSV RGKKDAATAL FNLSIFHENK ARIVQAGAVK YLIKLMELST GMVDKSVALL ANLSTIPEGR IAIAQEGGIP LLVEVVETGS QRGKENAAST
701: LFQLCLSSQK FCSLVLQEGA VPPLIALSQF GTPRGKEKAQ QILSHFRSQR EGAARKKKS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.