Factsheet for GSMUA_Achr4P00200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P22130_001	Banana	cytosol	74.86	83.25
GSMUA_Achr8P25140_001	Banana	plastid	47.73	80.0
Zm00001d012494_P001	Maize	cytosol	52.27	55.51
Zm00001d043043_P001	Maize	cytosol	51.99	55.2
TraesCS3A01G345800.1	Wheat	plastid	52.7	54.32
Os01t0823900-01	Rice	plastid	52.27	54.12
HORVU3Hr1G081300.1	Barley	plastid	52.7	53.92
Os05t0476700-01	Rice	plastid	51.85	53.91
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	51.28	53.88
TraesCS3B01G377600.1	Wheat	plastid	52.56	53.86
TraesCS3D01G339600.1	Wheat	plastid	52.7	53.85
OQU78182	Sorghum	plastid	51.42	53.31
TraesCS1A01G300000.1	Wheat	cytosol	50.14	52.84
TraesCS1B01G310100.1	Wheat	plastid	50.57	52.82
TraesCS1D01G299400.1	Wheat	cytosol, plastid	49.57	52.32
KXG33626	Sorghum	plastid	51.99	52.14
HORVU1Hr1G069990.1	Barley	plastid	49.29	50.88
VIT_08s0058g01100.t01	Wine grape	plastid	45.74	47.56
PGSC0003DMT400071349	Potato	plastid	45.74	46.53
Solyc09g018230.1.1	Tomato	plastid	45.45	46.51
AT5G01830.1	Thale cress	plastid	43.61	45.55
Bra001998.1-P	Field mustard	cytosol	38.49	45.39
KRH76105	Soybean	cytosol, plastid	44.74	44.87
CDX71307	Canola	cytosol	42.05	43.98
CDY31406	Canola	cytosol	42.05	43.92
Bra019022.1-P	Field mustard	cytosol	41.9	43.77
KRH65448	Soybean	plastid	28.69	41.39
GSMUA_Achr10P...	Banana	mitochondrion	23.15	36.06
GSMUA_Achr2P15530_001	Banana	mitochondrion	33.66	35.91
GSMUA_Achr9P28820_001	Banana	mitochondrion	29.83	35.06
GSMUA_Achr9P12570_001	Banana	cytosol	14.35	33.67
GSMUA_Achr7P09440_001	Banana	mitochondrion	30.26	33.39
GSMUA_Achr4P03430_001	Banana	cytosol	12.36	32.34
GSMUA_Achr6P06560_001	Banana	cytosol	17.05	32.17
GSMUA_Achr3P00280_001	Banana	cytosol	26.14	30.51
GSMUA_Achr10P...	Banana	cytosol	16.19	30.48
GSMUA_Achr10P...	Banana	cytosol	26.85	30.19
GSMUA_Achr1P24290_001	Banana	cytosol	25.71	29.62
GSMUA_Achr9P01670_001	Banana	cytosol	19.32	29.18
GSMUA_Achr4P01530_001	Banana	plasma membrane	23.72	27.33
GSMUA_Achr6P34170_001	Banana	cytosol	25.71	27.26
GSMUA_Achr6P07710_001	Banana	cytosol	13.64	26.89
GSMUA_Achr4P14130_001	Banana	cytosol	12.93	26.22
GSMUA_Achr3P18890_001	Banana	cytosol	13.35	26.18
GSMUA_Achr5P28670_001	Banana	cytosol	21.02	25.96
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	14.91	25.86
GSMUA_Achr10P...	Banana	cytosol	13.64	25.81
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	15.06	25.6
GSMUA_Achr9P14560_001	Banana	cytosol	21.16	25.47
GSMUA_Achr4P04900_001	Banana	cytosol	19.03	25.38
GSMUA_Achr4P11070_001	Banana	cytosol	15.2	25.36
GSMUA_Achr4P06990_001	Banana	plastid	14.35	25.06
GSMUA_Achr4P05030_001	Banana	cytosol	18.32	24.62
GSMUA_Achr5P07140_001	Banana	cytosol	21.73	24.36
GSMUA_Achr6P36530_001	Banana	cytosol	22.73	24.24
GSMUA_Achr9P15600_001	Banana	cytosol	23.15	24.11
GSMUA_Achr3P29830_001	Banana	cytosol	14.06	23.8
GSMUA_Achr3P06160_001	Banana	plastid	19.03	23.63
GSMUA_Achr1P22790_001	Banana	mitochondrion	14.63	22.74
GSMUA_Achr5P21360_001	Banana	cytosol	23.58	21.87
GSMUA_Achr5P16030_001	Banana	cytosol	14.2	21.23
GSMUA_Achr10P...	Banana	cytosol	25.57	20.83

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr4G00200_001	EnsemblPlants:GSMUA_Achr4P00200_001	EnsemblPlants:GSMUA_Achr4T00200_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0SJT7	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002963491	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 16 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00200_001]

Coordinates

chr4:-:193350..195464

Molecular Weight (calculated)

75879.8 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.043

Length

704 amino acids

Sequence
(BLAST)

001: MATSPFRPVP HPSSSPPPPP PDPSSDADLL RHLLSLSRDV SSSQQPSFSS SSPLRINPNL SSVPRNVKQL SFLFEELLLA VQDEDDDHDL ALPRTASLCF
101: REILLVLHRL KVLFDDHDCR SRAFVLFRAE RIAAEIHEQV VDLATFLDIV PLAELRVPED VRDLLRLLRR QLRRTSPAVD PAALSLRRDV LELVAGVESG
201: TIPDRGALRG IFRQLSLDGA RSCRHEIERV ERDIADRVVD DRRVPGMVAL ASILRYAKCV LFGASTPRSD SSIGAGGHKS PFSEAEDLAV PADFRCPISL
301: DLMRDPVVVA TGQTYDRESI DRWIGSGHAT CPKSGQALPY LELLPNRALK NLIARWCRDN NLPYDVADTI TSTSDRQDDA DGVTAGTNKA ALEAARMTAS
401: FLVEELATAP STEAAHRLVH ELRLLAKHGS DNRALVAEAG AIPLLLPLLR SADAGLQVNA VTALLNLSIL EANKRRIMHA DGAVDGVVHV LGEGTTWRAK
501: ENAAATVLSL CSVHSYRRRL ARHPRMVEVL VQMARDGPSS AKKDAMAAIL SLAGDRENTG RLVEGGVVAA ALETAVEPEV AEEASAVLAA VARRGGAEAV
601: AEAEGAVARL VGVLRRGSDW ARESAAAALV AVCRRTGASI VAELAAVPGI EWVIWELMGA GTERARRKAA ALSRICRRWA AAVEAERTAR FSAMSVTAAS
701: TTVA

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.