Factsheet for TraesCS1A01G300000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G299400.1	Wheat	cytosol, plastid	96.86	97.0
TraesCS1B01G310100.1	Wheat	plastid	96.41	95.55
HORVU1Hr1G069990.1	Barley	plastid	94.91	92.96
Os05t0476700-01	Rice	plastid	82.78	81.68
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	79.94	79.7
OQU78182	Sorghum	plastid	80.84	79.53
TraesCS3A01G345800.1	Wheat	plastid	77.84	76.13
GSMUA_Achr8P25140_001	Banana	plastid	35.48	56.43
GSMUA_Achr7P22130_001	Banana	cytosol	49.85	52.61
GSMUA_Achr4P00200_001	Banana	plastid	52.84	50.14
Bra001998.1-P	Field mustard	cytosol	39.52	44.22
Solyc09g018230.1.1	Tomato	plastid	45.21	43.9
PGSC0003DMT400071349	Potato	plastid	45.36	43.79
AT5G01830.1	Thale cress	plastid	43.86	43.47
VIT_08s0058g01100.t01	Wine grape	plastid	43.71	43.13
CDX71307	Canola	cytosol	42.81	42.5
Bra019022.1-P	Field mustard	cytosol	42.81	42.43
CDY31406	Canola	cytosol	42.66	42.28
KRH76105	Soybean	cytosol, plastid	43.41	41.31
KRH65448	Soybean	plastid	29.79	40.78
TraesCS6A01G190700.1	Wheat	plastid	36.08	33.24
TraesCS7A01G001900.1	Wheat	cytosol	24.4	30.75
TraesCS2A01G276400.1	Wheat	nucleus	20.21	29.35
TraesCS2A01G193000.1	Wheat	cytosol	15.27	28.25
TraesCS4A01G097700.1	Wheat	cytosol	30.09	28.11
TraesCS4A01G498700.1	Wheat	plastid	26.35	27.8
TraesCS5A01G078400.1	Wheat	cytosol	28.14	27.49
TraesCS6A01G293600.1	Wheat	cytosol	26.35	27.46
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	27.84	26.92
TraesCS7A01G549700.1	Wheat	cytosol	25.3	26.16
TraesCS7A01G293900.1	Wheat	cytosol	24.85	25.78
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	26.5	25.25
TraesCS2A01G190800.1	Wheat	cytosol	16.17	24.77
TraesCS3A01G390200.1	Wheat	cytosol	15.57	23.69
TraesCS3A01G410100.1	Wheat	cytosol	17.37	21.93
TraesCS3A01G521300.1	Wheat	cytosol	25.0	20.1
TraesCS3A01G410000.1	Wheat	cytosol	16.77	17.67

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1A01G300000	EnsemblPlants:TraesCS1A01G300000.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:494799446..494801615

Molecular Weight (calculated)

70724.3 Da

IEP (calculated)

7.201

GRAVY (calculated)

0.080

Length

668 amino acids

Sequence
(BLAST)

001: MASTAEPSSS PYSSSAPDAD ILRSLRRLAR DLAAAAPPAP FLRAVFASVS RRARLLVAVF DDLLLALGAG AGMPRSASLC LREVLLVLQR FKAVVADCSA
101: RSRMRLLLQS DEVAARVREL QHDLATLLDI LPVGELGLAD DVADLLTLAS RQCRRPAPEA AAEQELKASV LALIQEVERE IVPERERLEA ILEEVAINDP
201: ASCSQEIEIL EREIGDRLAE RWTSAMIALV GLLRYAKCVL FSAATPRPLD SKVDADDDDA EPLAPPPDFR CPISLDLMRD PVVSSSGQTY DRESITRWFG
301: AGKSTCPKTG QVLTNLELVP NKALKNLISR WCRENGVAME GSEPGKPEPA PPVAANKAAV EAARMTASFL VKKLSASFSP GSDNRVVHEI RLLAKSGSES
401: RAFIGEAGAV PLLVPLLNSE DAALQLNAVT ALLNLSILDA NKKRIMHTDG AVAALCEVMG SGATWRAKEN AAATVLSLSA VHTYRRRLGR NPLVIEKVVL
501: LVRTGPPSTK KDALAALLCL SAERENVGKL VGAGAAEAAL SAISEEETAA AVLASLAKRG GAEAIVNIDG AVAKLVAEMR RGTEWSRECA AAALVLLCRR
601: AGAAAAAQVL AISGVEWAIW ELMGSGSERA RRKAASLGRT CRRWAAANAA QNADCPASTV SPPTVAAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.