Factsheet for GSMUA_Achr5P28670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07140_001	Banana	cytosol	65.09	59.08
GSMUA_Achr10P...	Banana	cytosol	61.23	55.75
GSMUA_Achr6P34170_001	Banana	cytosol	58.25	50.0
VIT_06s0004g04530.t01	Wine grape	cytosol	59.47	49.71
Solyc11g066040.1.1	Tomato	cytosol	57.19	49.17
KRH29807	Soybean	cytosol	57.02	49.17
PGSC0003DMT400001049	Potato	cytosol	56.67	48.64
KRH24807	Soybean	cytosol	56.49	48.64
PGSC0003DMT400078166	Potato	cytosol	55.44	47.81
Solyc06g076040.2.1	Tomato	cytosol	55.26	47.66
Bra018212.1-P	Field mustard	cytosol	54.04	47.31
Bra033820.1-P	Field mustard	cytosol	54.39	47.11
CDX68379	Canola	cytosol	54.21	46.96
CDX86080	Canola	cytosol	54.04	46.95
TraesCS4A01G097700.1	Wheat	cytosol	58.77	46.85
AT3G46510.1	Thale cress	cytosol	54.21	46.82
CDX99112	Canola	cytosol	53.51	46.56
Zm00001d028623_P001	Maize	cytosol	58.6	46.01
Os03t0275900-01	Rice	cytosol	57.72	45.32
OQU92820	Sorghum	cytosol	59.12	44.99
CDX77213	Canola	cytosol	50.18	44.48
CDX68380	Canola	cytosol	41.4	44.36
CDY31736	Canola	cytosol	49.82	44.24
Bra035665.1-P	Field mustard	cytosol	50.35	44.02
HORVU4Hr1G059610.2	Barley	cytosol	59.12	43.65
TraesCS4B01G206900.1	Wheat	plastid	58.42	43.47
AT2G28830.1	Thale cress	endoplasmic reticulum	44.21	43.3
TraesCS4D01G207700.2	Wheat	plastid	58.95	43.24
GSMUA_Achr10P...	Banana	cytosol	63.86	42.13
GSMUA_Achr3P00280_001	Banana	cytosol	42.63	40.3
GSMUA_Achr1P24290_001	Banana	cytosol	42.63	39.77
GSMUA_Achr4P04900_001	Banana	cytosol	34.56	37.31
GSMUA_Achr4P05030_001	Banana	cytosol	34.21	37.21
KRG99865	Soybean	cytosol	38.42	35.49
GSMUA_Achr9P15600_001	Banana	cytosol	36.32	30.62
GSMUA_Achr6P06560_001	Banana	cytosol	19.12	29.22
GSMUA_Achr9P12570_001	Banana	cytosol	15.09	28.67
GSMUA_Achr8P25140_001	Banana	plastid	21.05	28.57
GSMUA_Achr9P01670_001	Banana	cytosol	22.81	27.9
GSMUA_Achr4P01530_001	Banana	plasma membrane	29.65	27.66
GSMUA_Achr10P...	Banana	cytosol	17.37	26.47
GSMUA_Achr10P...	Banana	mitochondrion	20.88	26.33
GSMUA_Achr2P15530_001	Banana	mitochondrion	29.47	25.45
GSMUA_Achr9P28820_001	Banana	mitochondrion	26.49	25.21
GSMUA_Achr7P09440_001	Banana	mitochondrion	27.89	24.92
GSMUA_Achr6P36530_001	Banana	cytosol	28.42	24.55
GSMUA_Achr7P22130_001	Banana	cytosol	25.79	23.22
GSMUA_Achr4P03430_001	Banana	cytosol	10.7	22.68
GSMUA_Achr5P21360_001	Banana	cytosol	28.95	21.74
GSMUA_Achr4P00200_001	Banana	plastid	25.96	21.02
GSMUA_Achr9P14560_001	Banana	cytosol	21.4	20.85
GSMUA_Achr6P07710_001	Banana	cytosol	12.81	20.45
GSMUA_Achr10P...	Banana	cytosol	12.98	19.89
GSMUA_Achr3P18890_001	Banana	cytosol	12.28	19.5
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	13.68	19.21
GSMUA_Achr4P06990_001	Banana	plastid	13.51	19.11
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	13.68	18.84
GSMUA_Achr4P14130_001	Banana	cytosol	11.4	18.73
GSMUA_Achr3P29830_001	Banana	cytosol	13.33	18.27
GSMUA_Achr4P11070_001	Banana	cytosol	12.98	17.54
GSMUA_Achr3P06160_001	Banana	plastid	17.37	17.46
GSMUA_Achr1P22790_001	Banana	mitochondrion	12.81	16.11
GSMUA_Achr5P16030_001	Banana	cytosol	12.98	15.71

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr5G28670_001	EnsemblPlants:GSMUA_Achr5P28670_001	EnsemblPlants:GSMUA_Achr5T28670_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0T2J1	PFAM:PF00514	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF142	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000295006B	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative U-box domain-containing protein 13 [Source:GMGC_GENE;Acc:GSMUA_Achr5G28670_001]

Coordinates

chr5:-:28750592..28755063

Molecular Weight (calculated)

62667.8 Da

IEP (calculated)

5.958

GRAVY (calculated)

-0.161

Length

570 amino acids

Sequence
(BLAST)

001: MEEEVKGAAA VVESLSRAVE EIAAISYHRN AYKKQFCNLS RRVRLLAPMF EELRESKKPI SEKAVTTLAS LGRAIGLAKE LLRFGSRGSK ISLVLDRDRM
101: MRRFQEVTAQ LEQTLGEISF GELDISDEVR EQVELVRTQF KRAKELLDTS DAELFNDLSS VYGMSIHAKV DPVLLRRLAE MLQLTTIADL KQESLALNEL
201: LGDDDRDLGE AIKKMSVVLK KIEDYMQTQN PDICIPASAK VFTSDEMAKA PVVPDDFRCP ISLELMRDPV IVSTGQTYER VFIEKWLKAG HVTCPKTQQK
301: LSSTSLTPNH VIRGLIIQWC EENDMELLKY PAHHGPDNSF CSAKEHARVV DLILKLSSES SDDQSTAAAE IRLLAKCSGD NRVCIAEAGA IPLLRGSMEA
401: RENAAATLFS LSVVDANKVI IGKVLKAGVM PTLMGLLMHP QGDMVDEALA ILAILSSHPQ GKVAIGAAEA LPLLVELIRS GSPSNKENAA TILVHLCNSE
501: EQHLAAAQVQ GVIGPLYEMT ESGTDRGKRK AVQLLGCMHK FLEQQHEARD QVQAKAQAQA QARAQAPADQ

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.