Factsheet for TraesCS4B01G206900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G097700.1	Wheat	cytosol	89.95	96.36
TraesCS4D01G207700.2	Wheat	plastid	97.52	96.14
HORVU4Hr1G059610.2	Barley	cytosol	90.6	89.9
Os03t0275900-01	Rice	cytosol	74.67	78.79
Zm00001d028623_P001	Maize	cytosol	73.11	77.14
OQU92820	Sorghum	cytosol	73.11	74.77
GSMUA_Achr10P...	Banana	cytosol	52.74	64.54
VIT_06s0004g04530.t01	Wine grape	cytosol	54.96	61.73
KRH29807	Soybean	cytosol	53.26	61.72
KRH24807	Soybean	cytosol	53.0	61.33
Solyc11g066040.1.1	Tomato	cytosol	53.0	61.24
GSMUA_Achr5P07140_001	Banana	cytosol	50.0	60.99
PGSC0003DMT400001049	Potato	cytosol	52.48	60.54
PGSC0003DMT400078166	Potato	cytosol	51.31	59.46
Solyc06g076040.2.1	Tomato	cytosol	50.91	59.0
AT2G28830.1	Thale cress	endoplasmic reticulum	44.52	58.59
GSMUA_Achr5P28670_001	Banana	cytosol	43.47	58.42
TraesCS5B01G087500.1	Wheat	cytosol	51.04	57.33
AT3G46510.1	Thale cress	cytosol	48.3	56.06
CDX77213	Canola	cytosol	46.87	55.83
Bra035665.1-P	Field mustard	cytosol	47.52	55.83
CDY31736	Canola	cytosol	46.61	55.61
Bra018212.1-P	Field mustard	cytosol	47.26	55.61
CDX86080	Canola	cytosol	47.39	55.34
CDX99112	Canola	cytosol	47.13	55.11
CDX68379	Canola	cytosol	47.13	54.86
Bra033820.1-P	Field mustard	cytosol	47.13	54.86
CDX68380	Canola	cytosol	37.6	54.14
GSMUA_Achr10P...	Banana	cytosol	54.96	48.73
KRG99865	Soybean	cytosol	37.34	46.35
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	15.14	45.67
TraesCS7B01G186600.1	Wheat	cytosol	33.68	40.06
TraesCS6B01G324000.1	Wheat	cytosol	33.29	39.66
TraesCS7B01G473200.1	Wheat	cytosol	32.51	36.94
TraesCS6B01G222200.1	Wheat	cytosol	18.8	34.37
TraesCS2B01G213900.1	Wheat	cytosol	15.8	33.52
TraesCS2B01G294100.1	Wheat	nucleus	20.1	33.48
TraesCS3B01G422200.1	Wheat	cytosol	17.23	29.86
TraesCS1B01G310100.1	Wheat	plastid	26.24	29.82
TraesCS3B01G377600.1	Wheat	plastid	25.33	28.24
TraesCS2B01G216300.1	Wheat	plastid	16.84	28.17
TraesCS2B01G499300.1	Wheat	plasma membrane	23.24	25.83
TraesCS3B01G591000.1	Wheat	cytosol	27.42	25.27
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	22.06	24.11
TraesCS3B01G443500.1	Wheat	cytosol	16.45	23.82

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	InterPro:Neurochondrin	PFAM:PF00514
PFAM:PF04564	PFAM:PF05536	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF142
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4B01G206900	EnsemblPlants:TraesCS4B01G206900.1
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:-:440327999..440334235

Molecular Weight (calculated)

82033.0 Da

IEP (calculated)

5.307

GRAVY (calculated)

-0.220

Length

766 amino acids

Sequence
(BLAST)

001: MPAAPAVPIS ARGVRLTAGT GGSQGGAERS SRRPPPQIPF LCTSPVSPPL RPHDAAGGAA AMDEEASTKA AAAAAVATAA KAATPPTPSG SGSPEGGKEE
101: VGDLVERVAE LVDEIAVISD FRNAYRRQFC NLSRRIRLLA PMMEEVKEGP RPLPEASLAA LRQLRDALAG ARELLRLGSN GSKIFLVLER EKIMQTFQDI
201: TSRLEQALAG ISFDELGISD EVREQVELVH AQFKRAKERP DTSDDILFND LISAYNSSTN DNADPDIIQR LSEKLQLVTI YDLNQESLAL HEMASGGDPG
301: AVVENMSMLL KKIKDFVQTQ DPIGIPASTT NPSRDDNLTS PVVPDDFRCP ISLDLMKDPV IVSTGQTYER GCIERWLEAG HDTCPKTQQK LPNKSLTPNY
401: VLRSLIAQWC EANGVEPPKR PAQPNTTEAT CTASEHSKVI ELLQKLSSQN LADQRGAAGM LRQLAKRSAE NRACIGEAGA IPILVSLLPT TDVSTQEHVV
501: TALLNLSIYE ENKARIITSG AVPGIVHVLK RGSMEARENS AATLFSLSLV DENKVTIGAS GAIPALVLLL GNGSQRGKKD AATALFNLCI YQGNKGKAVR
601: AGLVPILLEL LTETESGMVD EALAILAILS SHPEGKAAIS AAAAIPILVG VIRNGSSWNK ENAAAVLVHL CNGEQQQQHL AEAQEQGIVT LLEELAESGI
701: DRGKRKAIQL LERMNRFLKQ QSQAQGDAMA QAHTQSQTLS QVLVQAQADT QLEESLPPTS SHLPER

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.