Factsheet for GSMUA_Achr10P17120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06560_001	Banana	cytosol	70.86	71.05
GSMUA_Achr9P01670_001	Banana	cytosol	71.93	57.73
Os02t0488600-01	Rice	cytosol, nucleus	62.83	55.56
EES06804	Sorghum	cytosol	62.03	50.0
Zm00001d016501_P001	Maize	cytosol	59.36	47.74
KRH68828	Soybean	cytosol	53.21	46.28
VIT_04s0043g00840.t01	Wine grape	cytosol	55.35	45.49
PGSC0003DMT400016998	Potato	cytosol	54.01	44.99
VIT_00s0524g00030.t01	Wine grape	cytosol	53.74	44.77
Solyc09g056450.2.1	Tomato	cytosol	53.48	44.54
Os04t0348400-01	Rice	cytosol	54.55	44.44
KRG97080	Soybean	cytosol, nucleus	51.87	44.09
TraesCS2D01G275400.1	Wheat	nucleus	53.74	43.7
TraesCS2B01G294100.1	Wheat	nucleus	53.48	43.48
TraesCS2A01G276400.1	Wheat	nucleus	53.21	43.26
KRG99581	Soybean	cytosol	51.87	42.08
KRH46608	Soybean	cytosol	51.6	41.87
HORVU2Hr1G067610.6	Barley	cytosol	52.67	41.56
AT3G07360.1	Thale cress	cytosol	51.07	41.52
Bra040374.1-P	Field mustard	cytosol	50.0	41.46
CDX74050	Canola	cytosol	50.53	41.45
CDY08002	Canola	cytosol	50.27	41.32
Bra001247.1-P	Field mustard	cytosol	50.0	41.01
CDY71737	Canola	cytosol	50.27	40.69
CDY28059	Canola	cytosol	50.0	40.48
Bra029642.1-P	Field mustard	cytosol	50.0	40.48
KRG92593	Soybean	cytosol	45.99	38.83
Solyc04g050770.1.1	Tomato	cytosol	45.45	38.37
Solyc04g050780.1.1	Tomato	cytosol	42.78	37.12
PGSC0003DMT400039084	Potato	cytosol	43.58	36.79
PGSC0003DMT400011486	Potato	cytosol	33.16	34.73
GSMUA_Achr9P12570_001	Banana	cytosol	27.01	33.67
CDY68352	Canola	cytosol	40.37	33.11
CDY38506	Canola	cytosol	39.04	32.02
GSMUA_Achr4P03430_001	Banana	cytosol	22.46	31.23
AT5G18320.1	Thale cress	cytosol	37.97	31.0
AT5G18340.1	Thale cress	nucleus	35.83	29.39
AT5G18330.1	Thale cress	cytosol	33.96	28.54
GSMUA_Achr6P07710_001	Banana	cytosol	26.74	28.01
GSMUA_Achr10P...	Banana	cytosol	27.54	27.69
CDX70810	Canola	cytosol	33.96	26.91
GSMUA_Achr4P06990_001	Banana	plastid	28.61	26.55
GSMUA_Achr3P18890_001	Banana	cytosol	24.87	25.91
Bra006451.1-P	Field mustard	cytosol	31.82	25.48
GSMUA_Achr4P14130_001	Banana	cytosol	23.53	25.36
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	27.01	24.88
GSMUA_Achr8P25140_001	Banana	plastid	27.81	24.76
GSMUA_Achr3P29830_001	Banana	cytosol	26.74	24.04
GSMUA_Achr4P11070_001	Banana	cytosol	27.01	23.93
CDY51235	Canola	extracellular, golgi	31.82	22.93
GSMUA_Achr1P22790_001	Banana	mitochondrion	27.54	22.74
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	24.6	22.22
GSMUA_Achr6P36530_001	Banana	cytosol	37.7	21.36
GSMUA_Achr4P01530_001	Banana	plasma membrane	34.76	21.28
GSMUA_Achr5P16030_001	Banana	cytosol	26.2	20.81
GSMUA_Achr1P24290_001	Banana	cytosol	32.62	19.97
GSMUA_Achr3P00280_001	Banana	cytosol	32.09	19.9
GSMUA_Achr10P...	Banana	cytosol	31.02	18.53
GSMUA_Achr9P15600_001	Banana	cytosol	33.16	18.34
GSMUA_Achr5P21360_001	Banana	cytosol	37.17	18.31
GSMUA_Achr6P34170_001	Banana	cytosol	32.09	18.07
GSMUA_Achr2P15530_001	Banana	mitochondrion	30.75	17.42
GSMUA_Achr5P28670_001	Banana	cytosol	26.47	17.37
GSMUA_Achr4P04900_001	Banana	cytosol	23.8	16.86
GSMUA_Achr9P14560_001	Banana	cytosol	25.94	16.58
GSMUA_Achr5P07140_001	Banana	cytosol	27.27	16.24
GSMUA_Achr4P00200_001	Banana	plastid	30.48	16.19
GSMUA_Achr4P05030_001	Banana	cytosol	22.46	16.03
GSMUA_Achr9P28820_001	Banana	mitochondrion	25.67	16.03
GSMUA_Achr7P22130_001	Banana	cytosol	27.01	15.96
GSMUA_Achr7P09440_001	Banana	mitochondrion	25.94	15.2
GSMUA_Achr10P...	Banana	cytosol	32.35	14.0
GSMUA_Achr3P06160_001	Banana	plastid	20.86	13.76
GSMUA_Achr10P...	Banana	mitochondrion	13.64	11.28
Bra002153.1-P	Field mustard	cytosol	40.37	11.05
CDX70805	Canola	cytosol	32.89	7.98
CDY51234	Canola	cytosol	34.76	7.85
Bra006452.1-P	Field mustard	cytosol	34.76	7.83

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr10G17120_001	EnsemblPlants:GSMUA_Achr10P17120_001	EnsemblPlants:GSMUA_Achr10T17120_001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M0RIY7	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF75
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002965F9D	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

U-box domain-containing protein 9 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17120_001]

Coordinates

chr10:-:24446918..24449504

Molecular Weight (calculated)

40874.2 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.150

Length

374 amino acids

Sequence
(BLAST)

001: MKDPVVLASG QTYDRPFIQE WLNSGNRTCP QSHQILPNTI LTPNHLVHRM ISQWCIEHDV SLPPLDNEQD EDKGLITVTE KNVLDGLLQK ICSPSSVMEQ
101: KRALSELRLL TKCKRSFRAL IGENDDAISQ LLAVPSIPEL SADPKVQEDA VTTILNISIN ETNKKIVGDN PQAIPFLIDA LKAGRIETCS NSAAALFSLS
201: ALDSNKLKIG ELGAMKPLIE LLEQGSSSAR KDAGSAVFSL CLAHENRARA VSGGVLGVVL KAITDRSLVN ESLAILALLS SNQEAIEEIA ETGGVPCLLS
301: IIRESSCARN KENAVAVLYS ICMYDRKRLR EVGEEEDSNG IISQLVQNGT SRARRKAAGI LDKWKRTLRL HYSC

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.