Factsheet for PGSC0003DMT400016998

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g056450.2.1	Tomato	cytosol	97.1	97.1
VIT_00s0524g00030.t01	Wine grape	cytosol	69.04	69.04
KRH46608	Soybean	cytosol	69.04	67.25
KRG99581	Soybean	cytosol	68.82	67.03
AT3G07360.1	Thale cress	cytosol	61.92	60.43
Bra040374.1-P	Field mustard	cytosol	60.36	60.09
CDY71737	Canola	cytosol	60.8	59.09
CDY28059	Canola	cytosol	60.8	59.09
Bra029642.1-P	Field mustard	cytosol	60.13	58.44
Bra001247.1-P	Field mustard	cytosol	59.24	58.33
CDX74050	Canola	cytosol	59.24	58.33
CDY08002	Canola	cytosol	58.8	58.02
GSMUA_Achr6P06560_001	Banana	cytosol	45.88	55.23
GSMUA_Achr10P...	Banana	cytosol	44.99	54.01
GSMUA_Achr9P01670_001	Banana	cytosol	53.01	51.07
PGSC0003DMT400039084	Potato	cytosol	49.67	50.34
PGSC0003DMT400011486	Potato	cytosol	39.64	49.86
Os02t0488600-01	Rice	cytosol, nucleus	45.21	47.99
EES06804	Sorghum	cytosol	47.44	45.91
Zm00001d016501_P001	Maize	cytosol	47.22	45.59
Os04t0348400-01	Rice	cytosol	42.98	42.05
TraesCS2B01G294100.1	Wheat	nucleus	42.32	41.3
TraesCS2A01G276400.1	Wheat	nucleus	42.32	41.3
TraesCS2D01G275400.1	Wheat	nucleus	42.32	41.3
HORVU2Hr1G067610.6	Barley	cytosol	41.87	39.66
CDY68352	Canola	cytosol	39.2	38.6
AT5G18320.1	Thale cress	cytosol	38.98	38.21
CDY38506	Canola	cytosol	38.53	37.94
AT5G18330.1	Thale cress	cytosol	32.74	33.03
AT5G18340.1	Thale cress	nucleus	33.41	32.89
CDX70810	Canola	cytosol	33.41	31.78
Bra006451.1-P	Field mustard	cytosol	32.07	30.84
PGSC0003DMT400027542	Potato	cytosol	24.05	30.34
PGSC0003DMT400030161	Potato	cytosol	22.49	28.21
CDY51235	Canola	extracellular, golgi	32.07	27.75
PGSC0003DMT400019235	Potato	cytosol	36.75	26.44
PGSC0003DMT400078166	Potato	cytosol	38.75	26.32
PGSC0003DMT400001049	Potato	cytosol	38.53	26.05
PGSC0003DMT400015349	Potato	cytosol	36.75	25.5
PGSC0003DMT400078473	Potato	cytosol	36.53	25.23
PGSC0003DMT400034564	Potato	nucleus, plastid	22.94	22.49
PGSC0003DMT400060674	Potato	plastid	21.83	21.73
PGSC0003DMT400082693	Potato	cytosol	11.8	21.72
PGSC0003DMT400075612	Potato	cytosol	30.96	21.55
PGSC0003DMT400025648	Potato	cytosol	30.73	21.26
PGSC0003DMT400077205	Potato	cytosol	32.07	21.21
PGSC0003DMT400073254	Potato	cytosol	33.18	20.58
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	24.94	20.0
PGSC0003DMT400026700	Potato	cytosol	34.08	19.67
PGSC0003DMT400027406	Potato	cytosol	11.58	19.48
PGSC0003DMT400062931	Potato	cytosol	28.51	18.77
PGSC0003DMT400046295	Potato	cytosol	33.63	18.39
PGSC0003DMT400071349	Potato	plastid	27.39	17.77
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	17.15	16.92
Bra002153.1-P	Field mustard	cytosol	38.31	12.59
CDX70805	Canola	cytosol	33.41	9.73
CDY51234	Canola	cytosol	34.3	9.29
Bra006452.1-P	Field mustard	cytosol	34.3	9.27

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102579911	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1A8G0
PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400006640	PGSC:PGSC0003DMG400006640	EnsemblPlants:PGSC0003DMT400016998	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF227	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002968E85	InterPro:Ubox_domain	RefSeq:XP_006361322.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006640]

Coordinates

chr9:+:20844859..20847787

Molecular Weight (calculated)

49973.8 Da

IEP (calculated)

8.896

GRAVY (calculated)

-0.218

Length

449 amino acids

Sequence
(BLAST)

001: MAKTGVVEGD PLTVKEMELK RELQRLVKAI LSQEEINVDA IDKTQQILLA LKELKLKRRS SSFDLPFPEE FRCPLSKQLM RDPVMLASGQ TYDRPFIQKW
101: LKAGNRTCPQ TQQVLSHTIL TPNHLIRDMI SQWCKNNGIQ MPDSVQFLND EGLTEADRDL FLSLLEKMSS TLSDQKVAAR ELRLLTKKMP SFRSLFGESA
201: DAIPQLVRPL SQSNSNVNPN LQEDIITTLL NLSIHDNNKK LVAETPKVIP LLVDALRSGT IETRSNAAAA LFTLSALDSN KELIGKSGAL KPLVELLDEG
301: NPVAMKDVAS ALFSLCIIQD NKARAVRDGA VRAILKKIMS NVHVDELLAI LAMLSNNQKA VEEMGDLGAV TCLLNIIRET SCARSKENCI AVLYTICYSD
401: RTKWKTLRDE EKTYGTISQL AQNGTARAKR KANGILDRLN RAINLTHTA

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.