Factsheet for PGSC0003DMT400034564

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012440.1.1	Tomato	cytosol, plastid	97.6	97.39
PGSC0003DMT400060674	Potato	plastid	79.91	81.15
VIT_00s2269g00010.t01	Wine grape	plastid	76.2	77.21
KRH36562	Soybean	plastid	74.02	74.02
KRH11541	Soybean	plastid	73.14	73.3
KRH01984	Soybean	cytosol	66.38	71.53
KRH51173	Soybean	cytosol	66.81	71.5
Bra012713.1-P	Field mustard	cytosol	69.65	70.11
CDX90518	Canola	plastid	69.43	69.89
CDY09688	Canola	cytosol	69.21	69.82
Bra038470.1-P	Field mustard	plastid	70.31	68.8
AT4G16490.1	Thale cress	plastid	70.74	68.64
GSMUA_Achr4P06990_001	Banana	plastid	52.18	59.31
HORVU7Hr1G038870.1	Barley	plastid	36.03	57.49
GSMUA_Achr3P29830_001	Banana	cytosol	51.97	57.21
GSMUA_Achr4P11070_001	Banana	cytosol	51.31	55.69
Os07t0584900-01	Rice	plastid	55.02	53.96
EER97453	Sorghum	plastid	55.02	53.85
Zm00001d021951_P001	Maize	plastid	54.59	53.76
HORVU2Hr1G036080.15	Barley	plastid	53.49	53.49
GSMUA_Achr1P22790_001	Banana	mitochondrion	52.84	53.42
TraesCS2D01G197200.1	Wheat	plastid	53.28	53.16
TraesCS2B01G216300.1	Wheat	plastid	53.06	53.06
TraesCS2A01G190800.1	Wheat	cytosol	50.44	52.98
Zm00001d006705_P001	Maize	plastid	53.28	52.59
PGSC0003DMT400027542	Potato	cytosol	36.46	46.91
PGSC0003DMT400030161	Potato	cytosol	36.24	46.37
PGSC0003DMT400082693	Potato	cytosol	15.94	29.92
PGSC0003DMT400027406	Potato	cytosol	15.07	25.84
PGSC0003DMT400016998	Potato	cytosol	22.49	22.94
PGSC0003DMT400039084	Potato	cytosol	20.96	21.67
PGSC0003DMT400019235	Potato	cytosol	29.48	21.63
PGSC0003DMT400001049	Potato	cytosol	30.57	21.08
PGSC0003DMT400078166	Potato	cytosol	30.35	21.03
PGSC0003DMT400011486	Potato	cytosol	15.72	20.17
PGSC0003DMT400015349	Potato	cytosol	28.17	19.94
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	19.65	19.78
PGSC0003DMT400026700	Potato	cytosol	33.41	19.67
PGSC0003DMT400046295	Potato	cytosol	34.93	19.49
PGSC0003DMT400078473	Potato	cytosol	27.29	19.23
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	22.71	18.57
PGSC0003DMT400077205	Potato	cytosol	27.51	18.56
PGSC0003DMT400025648	Potato	cytosol	25.76	18.18
PGSC0003DMT400075612	Potato	cytosol	25.33	17.98
PGSC0003DMT400062931	Potato	cytosol	23.14	15.54
PGSC0003DMT400073254	Potato	cytosol	24.45	15.47
PGSC0003DMT400071349	Potato	plastid	21.18	14.02

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102593590	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000225	InterPro:IPR011989	UniProt:M1B0X1
PFAM:PF00514	EnsemblPlantsGene:PGSC0003DMG400013286	PGSC:PGSC0003DMG400013286	EnsemblPlants:PGSC0003DMT400034564	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF129	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000295792C	RefSeq:XP_006352348.1	SEG:seg

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400013286]

Coordinates

chr11:-:435221..437873

Molecular Weight (calculated)

48937.7 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.122

Length

458 amino acids

Sequence
(BLAST)

001: MVSLEDSHSH NSVSNSAHFG QTRPYYYTPP PSSIKINRSM GRSMRTIRST IFRTDCSGSE HSGAISENMT DSVIDIRLGE LAKKPPVNSK DSSSDEDYLQ
101: LSQAFSDFSA CSSDISGELQ RLASVPVLDL VLTQNPNSKP EPEPEPCLGF LEREKFSTEI IESISPEDLQ PTVKLCVDSL HSSSVAVKRS AAAKLRLLAK
201: NRADNRALIG ESGAIPVLIP LLRCTDPWTQ EHAVTALLNL SLHEPNKVLI TSSGAIKSLI YVLKTGTDTS KQNAACGLLS LALIDENKLS IGACGAIPPL
301: VCLLINGTNR GKKDALTTLY KLCSVKLNKE RAISAGAVKP LVGLVGEQGN GLAEKAMVVL SLLTGIDSGK EAIVEEGGIA ALVEAIEDSS DKGREFAVLT
401: LLQLCMDSVR NRGLLVREGG IPPLVALSQN GTAKAKHKAE TLLGYLREPR QEASSSTP

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.