Factsheet for VIT_00s2269g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11541	Soybean	plastid	79.2	78.34
KRH36562	Soybean	plastid	78.98	77.95
Solyc11g012440.1.1	Tomato	cytosol, plastid	77.88	76.69
PGSC0003DMT400034564	Potato	nucleus, plastid	77.21	76.2
KRH51173	Soybean	cytosol	71.68	75.7
KRH01984	Soybean	cytosol	71.02	75.53
PGSC0003DMT400060674	Potato	plastid	75.22	75.39
Solyc04g014810.2.1	Tomato	plastid	74.34	74.5
Bra012713.1-P	Field mustard	cytosol	73.23	72.75
CDY09688	Canola	cytosol	73.01	72.69
AT4G16490.1	Thale cress	plastid	75.89	72.67
Bra038470.1-P	Field mustard	plastid	75.22	72.65
CDX90518	Canola	plastid	72.35	71.87
GSMUA_Achr4P06990_001	Banana	plastid	55.31	62.03
GSMUA_Achr3P29830_001	Banana	cytosol	54.65	59.38
HORVU7Hr1G038870.1	Barley	plastid	37.61	59.23
GSMUA_Achr4P11070_001	Banana	cytosol	53.98	57.82
GSMUA_Achr1P22790_001	Banana	mitochondrion	57.3	57.17
HORVU2Hr1G036080.15	Barley	plastid	56.19	55.46
Zm00001d021951_P001	Maize	plastid	56.64	55.05
TraesCS2A01G190800.1	Wheat	cytosol	53.1	55.05
EER97453	Sorghum	plastid	56.86	54.91
TraesCS2D01G197200.1	Wheat	plastid	55.75	54.9
TraesCS2B01G216300.1	Wheat	plastid	55.53	54.8
Os07t0584900-01	Rice	plastid	56.42	54.6
Zm00001d006705_P001	Maize	plastid	55.97	54.53
VIT_18s0001g09130.t01	Wine grape	cytosol	39.16	45.62
VIT_04s0043g00840.t01	Wine grape	cytosol	24.34	24.18
VIT_00s0524g00030.t01	Wine grape	cytosol	23.67	23.83
VIT_13s0019g04710.t01	Wine grape	cytosol	30.09	21.66
VIT_06s0004g04530.t01	Wine grape	cytosol	32.08	21.26
VIT_01s0011g04770.t01	Wine grape	cytosol	29.65	20.97
VIT_07s0005g03520.t01	Wine grape	cytosol	35.18	20.2
VIT_07s0129g00590.t01	Wine grape	cytosol	37.39	19.93
VIT_13s0067g01460.t01	Wine grape	cytosol	29.65	19.48
VIT_03s0038g03660.t01	Wine grape	cytosol	26.99	19.03
VIT_18s0001g14180.t01	Wine grape	cytosol	26.99	17.84
VIT_10s0003g01730.t01	Wine grape	mitochondrion	25.44	15.84
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	23.67	15.76
VIT_01s0026g00190.t01	Wine grape	cytosol	21.68	14.35
VIT_08s0058g01100.t01	Wine grape	plastid	20.13	13.44

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100854922	wikigene:100854922	EntrezGene:104880477	MapMan:35.1	UniProt:A5C9T4
EMBL:AM487281	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CAN79837	ProteinID:CAN79837.1
ProteinID:CCB57481	ProteinID:CCB57481.1	EMBL:FN596216	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	InterPro:IPR000225
InterPro:IPR011989	EntrezGene:LOC100854922	wikigene:LOC100854922	PFAM:PF00514	PFscan:PS50176	PANTHER:PTHR23315
PANTHER:PTHR23315:SF129	SMART:SM00185	SUPFAM:SSF48371	TIGR:TC56497	TIGR:TC58809	TIGR:TC65825
UniParc:UPI0001524E82	ArrayExpress:VIT_00s2269g00010	EnsemblPlantsGene:VIT_00s2269g00010	EnsemblPlants:VIT_00s2269g00010.t01	unigene:Vvi.13593	unigene:Vvi.2250
RefSeq:XP_003635632	RefSeq:XP_003635632.1	RefSeq:XP_010655424.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:41505258..41507600

Molecular Weight (calculated)

48222.6 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.139

Length

452 amino acids

Sequence
(BLAST)

001: MVSLEESHSN SNVLASSRTL YNTSSTSSIK IQRSLGRSMR TIRSNLYQTD RSCSFADKSS CVSENLTDSV IDMRLGELAS RSNKSAQSPS QDEEYLDLSH
101: AFSDFSACSS DISGELQRLA SLPPSEDVAK NESSDPEPEP CLGFLQRENF STEIIESISP EDLQPTVKMC VDGLQSPSVA VKRSAAAKLR LLAKNRADNR
201: ALIGESGAVP ALIPLLRCTD PWTQEHAVTA LLNLSLHEEN KTLITNAGAI KSLVYVLKTG TETSKQNAAC ALLNLSLIDD NKISIGACGA IPPLVSLLLN
301: GSNRGKKDAL TTLYKLCSMK QNKERAVSAG AVKLLVELVA EQGTGLAEKA MVILSSLAAI PEGRTAIVEE GGIPALVEAI EDGSVKGKEF AVLTLLLLCA
401: DSVRNRGLLV REGGIPPLVA LSQTGTARAK HKAETLLGYL REPRQEASTS SP

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.