Factsheet for VIT_01s0011g04770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00350.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015349	Potato	cytosol	69.01	68.16
KRG89279	Soybean	cytosol	69.33	68.05
Solyc04g007640.2.1	Tomato	cytosol	68.7	67.85
KRH50347	Soybean	nucleus	69.33	67.74
PGSC0003DMT400078473	Potato	cytosol	65.57	64.46
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.37	63.44
Solyc05g008230.2.1	Tomato	cytosol	64.48	63.38
Bra012355.1-P	Field mustard	plasma membrane	58.22	63.27
AT1G23030.1	Thale cress	cytosol	60.56	63.24
AT1G71020.1	Thale cress	cytosol	61.97	63.06
CDY12497	Canola	cytosol	58.22	62.31
CDY04746	Canola	cytosol, endoplasmic reticulum	59.31	62.23
CDY21412	Canola	cytosol, endoplasmic reticulum	59.0	62.01
Bra024559.1-P	Field mustard	cytosol, plasma membrane	59.0	61.9
Bra016165.1-P	Field mustard	cytosol, plasma membrane	58.53	60.71
CDX96295	Canola	cytosol, plasma membrane	58.37	60.55
CDX72769	Canola	cytosol	57.43	59.97
CDY04747	Canola	cytosol, golgi	40.53	58.73
EES07310	Sorghum	cytosol	52.74	52.82
Zm00001d000381_P001	Maize	cytosol	52.43	52.51
Os02t0732200-01	Rice	cytosol	51.49	51.65
TraesCS6D01G274500.1	Wheat	cytosol	50.55	50.39
TraesCS6A01G293600.1	Wheat	cytosol	50.39	50.23
TraesCS6B01G324000.1	Wheat	cytosol	50.55	50.23
GSMUA_Achr9P15600_001	Banana	cytosol	49.3	46.6
VIT_13s0019g04710.t01	Wine grape	cytosol	44.6	45.38
VIT_06s0004g04530.t01	Wine grape	cytosol	43.04	40.32
HORVU6Hr1G073280.1	Barley	cytosol	50.39	40.1
VIT_03s0038g03660.t01	Wine grape	cytosol	40.06	39.94
VIT_04s0043g00840.t01	Wine grape	cytosol	26.92	37.8
VIT_00s0524g00030.t01	Wine grape	cytosol	26.45	37.64
VIT_18s0001g09130.t01	Wine grape	cytosol	21.13	34.79
VIT_13s0067g01460.t01	Wine grape	cytosol	36.31	33.72
VIT_18s0001g14180.t01	Wine grape	cytosol	35.84	33.48
VIT_00s2269g00010.t01	Wine grape	plastid	20.97	29.65
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.39	28.51
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	29.89	28.13
VIT_08s0058g01100.t01	Wine grape	plastid	28.95	27.33
VIT_07s0005g03520.t01	Wine grape	cytosol	33.33	27.06
VIT_01s0026g00190.t01	Wine grape	cytosol	27.07	25.33
VIT_07s0129g00590.t01	Wine grape	cytosol	32.71	24.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	EntrezGene:100264511	wikigene:100264511	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CCB50839	ProteinID:CCB50839.1	ncoils:Coil
UniProt:F6HFJ0	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100264511
wikigene:LOC100264511	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000198298A
InterPro:Ubox_domain	ArrayExpress:VIT_01s0011g04770	EnsemblPlantsGene:VIT_01s0011g04770	EnsemblPlants:VIT_01s0011g04770.t01	unigene:Vvi.22118	RefSeq:XP_002280520
RefSeq:XP_002280520.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HFJ0]

Coordinates

chr1:+:4353649..4357853

Molecular Weight (calculated)

69293.4 Da

IEP (calculated)

7.619

GRAVY (calculated)

-0.066

Length

639 amino acids

Sequence
(BLAST)

001: MDAGGELLAL VNDVVGVSVG FGGVFKRDCT DLVRRIALLT HLFEEIRDFG AGLRPLDVST SSASPLTCLS EVANALQAAK RLLSAAGNFS SDAFSDGAAK
101: KITFQFQCVT WKLEKTLGNL PYDHFEISEE VREQVELVRA QLRRATERYG PLNSKVVSCA LSLPLDREIH PRQSGNRVTG SFHIENLGNI NPEAKAKMDS
201: VPKCNDSHSI TDQFVPESGR LSNSSASAEA HLSNDIDAEK GHKSATKSLE EIKKPDSVVI PNDFLCPISL ELMRDPVIVA TGQTYERSYI QRWIDCGNLT
301: CPKTQLELQN LTLTPNYALR SLITQWCTKN NIEQPTGLVN GRIKKSDGTF RDVSGDIAAI EALVRKLSSW SIEERRAAAT EIRSLSKRST DNRILIAEAG
401: AIPALVNLLT TDDVVTQENA VTSILNLSIY ENNKGLIMLA GAIPSIVLVL RSGSMEAREN AAATLFSLSV ADENKIIIGA SGAMPALVEL LQNGSTRGKK
501: DAATALFNLC IYQGNKSRAV KAGIITALSK MLTDLNNCMV DEALTILSVL SSHQEAKISI VKASIIPVLI DLLRTGLPRN KENAAAILLS LCKRDNENLA
601: CISRLGAVIP LAELAKSGTE RAKRKATSLL EHLQRLQQL

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.