CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04746	Canola	cytosol, endoplasmic reticulum	98.87	71.59
CDY21412	Canola	cytosol, endoplasmic reticulum	98.64	71.55
Bra024559.1-P	Field mustard	cytosol, plasma membrane	98.41	71.26
AT1G23030.1	Thale cress	cytosol	90.25	65.03
CDY12497	Canola	cytosol	83.45	61.64
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.86	61.39
CDX96295	Canola	cytosol, plasma membrane	76.64	54.87
CDX72769	Canola	cytosol	74.83	53.92
VIT_01s0011g04770.t01	Wine grape	cytosol	58.73	40.53
KRH50347	Soybean	nucleus	59.86	40.37
KRG89279	Soybean	cytosol	59.41	40.25
PGSC0003DMT400015349	Potato	cytosol	55.78	38.02
Solyc04g007640.2.1	Tomato	cytosol	55.1	37.56
PGSC0003DMT400078473	Potato	cytosol	54.65	37.08
Solyc05g008230.2.1	Tomato	cytosol	54.2	36.77
CDX68380	Canola	cytosol	38.78	32.14
Zm00001d000381_P001	Maize	cytosol	46.03	31.82
EES07310	Sorghum	cytosol	45.8	31.66
TraesCS6D01G274500.1	Wheat	cytosol	45.58	31.36
TraesCS6A01G293600.1	Wheat	cytosol	45.58	31.36
TraesCS6B01G324000.1	Wheat	cytosol	45.58	31.26
Os02t0732200-01	Rice	cytosol	45.12	31.24
GSMUA_Achr9P15600_001	Banana	cytosol	45.35	29.59
CDX86080	Canola	cytosol	39.91	26.83
CDY31736	Canola	cytosol	39.0	26.79
CDX77213	Canola	cytosol	38.78	26.59
CDX99112	Canola	cytosol	39.46	26.56
CDX68379	Canola	cytosol	39.0	26.14
CDX78273	Canola	cytosol	36.28	25.24
HORVU6Hr1G073280.1	Barley	cytosol	45.35	24.91
CDX95193	Canola	cytosol	32.65	21.98
CDY68037	Canola	cytosol	32.65	21.98
CDY28059	Canola	cytosol	22.9	21.86
CDY71737	Canola	cytosol	22.68	21.64
CDX74050	Canola	cytosol	22.22	21.49
CDY08002	Canola	cytosol	21.32	20.66
CDY38931	Canola	cytosol	28.34	20.33
CDY68352	Canola	cytosol	20.86	20.18
CDX90186	Canola	mitochondrion	31.52	19.5
CDX94661	Canola	plastid	31.29	19.41
CDY43686	Canola	plastid	28.8	19.21
CDY37666	Canola	cytosol, plastid	28.8	19.21
CDY38506	Canola	cytosol	19.73	19.08
CDY43332	Canola	mitochondrion	31.07	19.05
CDX99816	Canola	plastid	30.39	18.51
CDY48332	Canola	mitochondrion, plastid	29.48	18.47
CDX71307	Canola	cytosol	28.12	18.43
CDY31406	Canola	cytosol	28.12	18.4
CDY28679	Canola	cytosol	10.66	17.87
CDX73439	Canola	plastid	36.05	17.65
CDY18649	Canola	cytosol, plastid	28.34	17.56
CDY04344	Canola	cytosol	12.7	17.55
CDX81323	Canola	cytosol, plastid	28.57	17.43
CDY04342	Canola	cytosol	13.15	17.42
CDX93411	Canola	mitochondrion	26.98	17.05
CDX76873	Canola	cytosol, plastid	28.8	17.0
CDY55050	Canola	cytosol	26.76	16.95
CDY24520	Canola	cytosol	24.72	16.17
CDX74298	Canola	plastid	12.93	16.1
CDY12838	Canola	cytosol	25.4	16.02
CDX73449	Canola	cytosol	25.4	15.91
CDY54132	Canola	cytosol	24.49	15.88
CDX91947	Canola	plastid	12.7	15.86
CDY32692	Canola	peroxisome	12.7	15.86
CDY02828	Canola	cytosol	12.7	15.82
CDX70810	Canola	cytosol	16.78	15.68
CDX78262	Canola	cytosol	24.94	15.67
CDY57440	Canola	cytosol	23.36	15.63
CDY51235	Canola	extracellular, golgi	18.14	15.41
CDY02891	Canola	cytosol	25.17	15.06
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	24.94	14.91
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	28.57	12.2
CDX90518	Canola	plastid	12.47	12.09
CDY09688	Canola	cytosol	12.02	11.67
CDX70805	Canola	cytosol	18.59	5.32
CDY51234	Canola	cytosol	17.69	4.71

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078EUU9	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDY04747	ProteinID:CDY04747	ProteinID:CDY04747.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00119416001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE1AB2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC05g18420D

Coordinates

chrLK031957:-:393400..395162

Molecular Weight (calculated)

49072.7 Da

IEP (calculated)

6.334

GRAVY (calculated)

-0.234

Length

441 amino acids

Sequence
(BLAST)

001: MAGVNVSPAS LLELIAEIAE IPINAGVFKK DCADLTRRVC LLTHLVEEIR DSKPIDSAAA SSSENDWWSD LVVGLQAAKR LLSSATRFQA RDSSDGAVKR
101: ISFQLQCITW KLEKALSNLP YDLYDISDEV GEQVELARSQ LRRAMQRYGS LNSNKFLNGL SEPMERDAFS NVKIKAEEEK LEGISETVPF GEAKKQLRKS
201: SSISLAFYLS KDADTDRLDK MVTKNTDESK KSDKLTIPVD FLCPVSLELM KDPVIVATGQ TYERAYIQRW IDCGNLTCPK TQQKLENFTL TPNYVLRSLI
301: SRWCAEHNIE QPAGYINGRS RNRGDMSVIK ALVHKLSSRS VEERRNAVSE IRSLSKRSTD NRILIAEAGA IPVLVNLLTS EDVATQENAI TCVLNLSIYD
401: NNKELIMFAG AVTSIVQVLR AGTMEARENA AATLCSLSLY F

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.