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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69199
CDX71145
CDX72576
CDX72699
CDX73439
CDX75553
CDX78273
CDX80321
CDX88676
CDY01754
CDY02848
CDY08909
CDY10078
CDY24091
CDY24829
CDY25849
CDY28576
CDY28577
CDY32528
CDY32673
CDY32674
CDY36901
CDY44976
CDY45117
CDY47053
CDY53183
CDY58069
CDY58070
CDY60212
CDY68276
CDY69707
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54850.1 CDY10078 AT1G04130.1 21798944
AT3G54850.1 CDY32528 AT1G04130.1 21798944
AT3G54850.1 CDY24091 AT1G53510.1 21798944
AT3G54850.1 CDY25849 AT1G53510.1 21798944
AT3G54850.1 CDY45117 AT1G53510.1 21798944
AT3G54850.1 CDY60212 AT1G53510.1 21798944
AT3G54850.1 CDY01754 AT1G69690.1 21798944
AT3G54850.1 CDY28576 AT1G69690.1 21798944
AT3G54850.1 CDY28577 AT1G69690.1 21798944
AT3G54850.1 CDY68276 AT1G69690.1 21798944
AT3G54850.1 CDY36901 AT3G48150.1 21798944
AT3G54850.1 CDY44976 AT3G48150.1 21798944
AT3G54850.1 CDY58069 AT3G48150.1 21798944
AT3G54850.1 CDY58070 AT3G48150.1 21798944
AT3G54850.1 CDY70805 AT3G48150.1 21798944
AT3G54850.1 CDX73439 AT3G54850.1 21798944
AT3G54850.1 CDX78273 AT3G54850.1 21798944
AT3G54850.1 CDX69199 AT4G36110.1 21798944
AT3G54850.1 CDX72576 AT4G36110.1 21798944
AT3G54850.1 CDX75553 AT4G36110.1 21798944
AT3G54850.1 CDY08909 AT4G36110.1 21798944
AT3G54850.1 CDY24829 AT4G36110.1 21798944
AT3G54850.1 CDY47053 AT4G36110.1 21798944
AT3G54850.1 CDX72699 AT4G39470.1 21798944
AT3G54850.1 CDY53183 AT4G39470.1 21798944
AT3G54850.1 CDX71145 AT5G58950.1 21798944
AT3G54850.1 CDX80321 AT5G58950.1 21798944
AT3G54850.1 CDX88676 AT5G58950.1 21798944
AT3G54850.1 CDY02848 AT5G58950.1 21798944
AT3G54850.1 CDY32673 AT5G58950.1 21798944
AT3G54850.1 CDY32674 AT5G58950.1 21798944
AT3G54850.1 CDY69707 AT5G58950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007105.1-P Field mustard cytosol 99.37 99.37
AT3G54850.1 Thale cress cytosol 87.38 87.66
KRH04403 Soybean mitochondrion 40.69 71.27
CDX73439 Canola plastid 98.27 69.15
VIT_13s0019g04710.t01 Wine grape cytosol 64.98 65.61
Solyc11g008390.1.1 Tomato cytosol 64.35 65.38
PGSC0003DMT400019235 Potato cytosol 64.2 65.22
KRG91959 Soybean cytosol 64.67 64.98
KRH34817 Soybean cytosol 64.2 64.4
TraesCS7A01G001900.1 Wheat cytosol 51.1 61.13
EER87680 Sorghum cytosol 55.36 58.4
HORVU7Hr1G000780.1 Barley cytosol 54.1 58.14
TraesCS7D01G001600.2 Wheat cytosol, plastid 54.42 57.31
Os06t0102700-01 Rice plasma membrane 54.26 56.95
Zm00001d045632_P004 Maize cytosol, mitochondrion 55.05 55.4
GSMUA_Achr3P00280_001 Banana cytosol 52.68 55.39
TraesCS4A01G498700.1 Wheat plastid 53.79 53.87
GSMUA_Achr1P24290_001 Banana cytosol 50.32 52.21
CDX68379 Canola cytosol 51.73 49.85
CDX86080 Canola cytosol 51.26 49.54
CDX99112 Canola cytosol 51.1 49.47
CDX68380 Canola cytosol 41.32 49.25
CDY31736 Canola cytosol 47.95 47.35
CDX77213 Canola cytosol 47.95 47.28
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 40.38 43.54
CDY28679 Canola cytosol 17.98 43.35
CDY12497 Canola cytosol 40.22 42.71
CDY21412 Canola cytosol, endoplasmic reticulum 40.38 42.11
CDY04746 Canola cytosol, endoplasmic reticulum 40.38 42.04
CDX96295 Canola cytosol, plasma membrane 39.75 40.91
CDX72769 Canola cytosol 38.33 39.71
CDY68037 Canola cytosol 40.06 38.78
CDX95193 Canola cytosol 39.75 38.47
CDX91947 Canola plastid 20.35 36.54
CDY04747 Canola cytosol, golgi 25.24 36.28
CDX74298 Canola plastid 20.03 35.88
CDY71737 Canola cytosol 25.87 35.5
CDX74050 Canola cytosol 25.39 35.31
CDY28059 Canola cytosol 25.71 35.28
CDY32692 Canola peroxisome 19.56 35.13
CDY08002 Canola cytosol 24.76 34.51
CDY02828 Canola cytosol 19.24 34.46
CDY68352 Canola cytosol 23.19 32.24
CDY38506 Canola cytosol 22.71 31.58
CDX90186 Canola mitochondrion 35.17 31.28
CDY43332 Canola mitochondrion 35.02 30.88
CDX76873 Canola cytosol, plastid 36.12 30.66
CDY48332 Canola mitochondrion, plastid 33.91 30.54
CDX94661 Canola plastid 34.07 30.38
CDY18649 Canola cytosol, plastid 33.6 29.92
CDX90518 Canola plastid 21.29 29.67
CDX78262 Canola cytosol 32.81 29.63
CDX81323 Canola cytosol, plastid 33.75 29.6
CDX99816 Canola plastid 33.75 29.56
CDX73449 Canola cytosol 32.65 29.4
CDY09688 Canola cytosol 20.98 29.3
CDY43686 Canola plastid 30.28 29.05
CDY02891 Canola cytosol 33.75 29.04
CDY37666 Canola cytosol, plastid 30.13 28.9
CDY64696 Canola cytosol, extracellular, mitochondrion, plastid 33.44 28.73
CDY57440 Canola cytosol 29.02 27.92
CDY12838 Canola cytosol 30.76 27.9
CDX71307 Canola cytosol 29.02 27.34
CDY31406 Canola cytosol 29.02 27.3
CDY38931 Canola cytosol 26.34 27.15
CDX70810 Canola cytosol 18.3 24.58
CDY51235 Canola extracellular, golgi 18.93 23.12
CDY46092 Canola endoplasmic reticulum, golgi, plasma membrane, plastid 35.8 21.97
CDY55050 Canola cytosol 23.66 21.55
CDX93411 Canola mitochondrion 23.5 21.35
CDY24520 Canola cytosol 22.4 21.07
CDY54132 Canola cytosol 22.4 20.88
CDY04344 Canola cytosol 8.83 17.55
CDY04342 Canola cytosol 8.99 17.12
CDX70805 Canola cytosol 19.24 7.92
CDY51234 Canola cytosol 18.93 7.24
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10GO:A0A078CT02InterPro:ARM-likeInterPro:ARM-type_fold
InterPro:ArmadilloEnsemblPlants:CDX78273ProteinID:CDX78273ProteinID:CDX78273.1GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00129616001InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083PFAM:PF00514PFAM:PF04564PFscan:PS50176
PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF111SMART:SM00185SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EEC4DDInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaA09g34680D
Coordinates
chrLK031814:+:2133977..2136807
Molecular Weight (calculated)
69209.5 Da
IEP (calculated)
4.873
GRAVY (calculated)
-0.190
Length
634 amino acids
Sequence
(BLAST)
001: MGSTNGSDEE LMSRLVDSVK QISKFSNSKG FFGRIQGDLV RRITLLSPFF EELIDINAEL NEEQQLTGFE VMRIALDSSL ELFRSVNGGS KLLQIVHRGP
101: VMQKFHDVTV EIEAALTQIP YDHFQVSEEV IEQVKLLHSQ FKRATERQED YDLQLSHDLA VAESVVDPDP ETLKRLSQEL QLSTIDELKK ESHAIHEYFL
201: SYEGDPDDCF QRMSSLLKKL VDCASTESSE PDTSTGSKVI SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHSG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSSY RTTRPGGGSS SSDCDRAFVL ALLEKLANGS TEQQRAAAGE LRLLAKRNAD NRVCIAEAGA IPLLVELLSS
401: PDPRTQEHSV TALLNLSINE GNKGAIVDAG AITDIVEVLK NGSMEARENA AATLFSLSVV DENKVAIGAA GAIQALISLL EEGTRRGKKD AATAIFNLCI
501: YQGNKSRAIK GGIVDPLTRL LKDAGGGMVD EALAILAILS TNQEGKAAIG EADTIPVLVE IIRTGSPRNR ENAAAILWYL CIGNMERLNV AREVGADVAL
601: KELTENGTDR AKRKAASLLE IIQQLEGVVI STVP
Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)
001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP
Arabidopsis Description
PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.