CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90186	Canola	mitochondrion	86.92	86.68
CDY43332	Canola	mitochondrion	87.34	86.37
AT1G29340.1	Thale cress	plastid	85.23	83.13
CDY48332	Canola	mitochondrion, plastid	81.43	82.24
CDX99816	Canola	plastid	81.29	79.83
KRH21208	Soybean	mitochondrion	68.07	67.6
KRH11061	Soybean	mitochondrion, plastid	67.79	67.32
KRH59027	Soybean	mitochondrion	65.96	65.59
KRH42917	Soybean	mitochondrion	64.98	64.62
VIT_10s0003g01730.t01	Wine grape	mitochondrion	65.54	64.19
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	65.26	64.09
PGSC0003DMT400073254	Potato	cytosol	65.26	64.09
CDY43686	Canola	plastid	54.99	59.15
CDY37666	Canola	cytosol, plastid	54.71	58.85
GSMUA_Achr2P15530_001	Banana	mitochondrion	50.07	53.94
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.54	52.98
TraesCS6B01G222200.1	Wheat	cytosol	30.94	52.51
GSMUA_Achr9P28820_001	Banana	mitochondrion	42.48	50.42
GSMUA_Achr10P...	Banana	mitochondrion	31.36	49.34
Os02t0234300-01	Rice	cytosol	38.26	46.82
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.73	45.11
Zm00001d016225_P001	Maize	plastid	46.13	44.99
EES04812	Sorghum	plastid	45.57	44.44
TraesCS6D01G180400.1	Wheat	plastid	43.6	42.76
TraesCS6A01G190700.1	Wheat	plastid	43.6	42.76
HORVU6Hr1G041430.8	Barley	mitochondrion	43.6	37.62
CDX71307	Canola	cytosol	35.3	37.3
CDY31406	Canola	cytosol	35.16	37.09
CDY28679	Canola	cytosol	13.36	36.12
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.27	34.18
CDX78273	Canola	cytosol	30.38	34.07
CDY12497	Canola	cytosol	28.55	34.0
CDX86080	Canola	cytosol	30.38	32.93
CDX68380	Canola	cytosol	24.61	32.89
CDX99112	Canola	cytosol	30.24	32.82
CDX68379	Canola	cytosol	30.24	32.67
CDY04746	Canola	cytosol, endoplasmic reticulum	27.85	32.51
CDX96295	Canola	cytosol, plasma membrane	28.13	32.47
CDY21412	Canola	cytosol, endoplasmic reticulum	27.71	32.4
CDX72769	Canola	cytosol	27.57	32.03
CDY31736	Canola	cytosol	28.83	31.93
CDX77213	Canola	cytosol	28.83	31.88
CDY04747	Canola	cytosol, golgi	19.41	31.29
CDX74298	Canola	plastid	15.19	30.51
CDX91947	Canola	plastid	15.05	30.31
CDY32692	Canola	peroxisome	14.91	30.03
CDY02828	Canola	cytosol	14.77	29.66
CDY68037	Canola	cytosol	27.0	29.31
CDX95193	Canola	cytosol	26.86	29.16
CDX74050	Canola	cytosol	18.57	28.95
CDY71737	Canola	cytosol	18.71	28.79
CDY08002	Canola	cytosol	18.28	28.57
CDY28059	Canola	cytosol	18.57	28.57
CDY24520	Canola	cytosol	26.3	27.74
CDY54132	Canola	cytosol	26.44	27.65
CDY68352	Canola	cytosol	17.44	27.19
CDY38506	Canola	cytosol	17.02	26.54
CDX76873	Canola	cytosol, plastid	27.71	26.37
CDY04344	Canola	cytosol	11.67	26.02
CDY04342	Canola	cytosol	11.96	25.53
CDX90518	Canola	plastid	16.32	25.49
CDY55050	Canola	cytosol	24.75	25.29
CDY18649	Canola	cytosol, plastid	25.18	25.14
CDX93411	Canola	mitochondrion	24.61	25.07
CDY09688	Canola	cytosol	15.89	24.89
CDX81323	Canola	cytosol, plastid	25.18	24.76
CDX73439	Canola	plastid	30.24	23.86
CDY57440	Canola	cytosol	22.08	23.82
CDX78262	Canola	cytosol	23.35	23.65
CDY12838	Canola	cytosol	23.07	23.46
CDX73449	Canola	cytosol	23.21	23.44
CDY02891	Canola	cytosol	23.77	22.93
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	23.77	22.9
CDY38931	Canola	cytosol	19.27	22.28
CDX70810	Canola	cytosol	14.06	21.19
CDY51235	Canola	extracellular, golgi	14.21	19.46
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	27.57	18.97
CDX70805	Canola	cytosol	16.03	7.4
CDY51234	Canola	cytosol	15.47	6.64

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DZR9	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX94661	ProteinID:CDX94661	ProteinID:CDX94661.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00157996001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EC251C	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC07g09970D

Coordinates

chrLK031883:+:889249..891384

Molecular Weight (calculated)

77374.9 Da

IEP (calculated)

6.116

GRAVY (calculated)

0.013

Length

711 amino acids

Sequence
(BLAST)

001: MATAAVFSSL RRRKSPSLEA FLAPVDLSGT ALIQTLASIS TEIISCFAAI RFSFQRRNAR SLIRKIEIFL VLFEFLAESR WGSSSSSSTA LLCLKELYLL
101: LYRSKILLDY CAHSSKLWLI LQTPSISGYF HDLNQEISTL LDVLPINGLD LTDDIREQIE LLRSQSRRSR LYIDNHDESL RQTFYSFLDG FENAEIPNAS
201: SLKTFFPEKL SIKDSESCTA EIEFLEDQIA NHDGDLEPTG SVINAFVAIA RYCRFLLFGF EDDGFEWRHK PSKEEIGRGE TLITVPKDFV CAISLELMLD
301: PVIISTGQTY DRSSIARWIE EGHCTCPKTG QMLTDSRIVP NRALKNLIVQ WCTASGVSCE SEFITDSPNE GFVSALPTKA AVEANRATVS ILVKYLAEGS
401: EAAQTVAARE IRLLAKTGRE NRECIAEAGA IPHLRRLLKS ENAVAVENSV TAMLNLSIYE KNKSRIMEED GCLECIVSVL VSGLTVEAQE NAAATLFSLS
501: AVHDYKKRIA SVDQCVEALA SLLQNGTPRG KKDAVTALYN LSTHPDNCSR MVEGGGVSSL VGALKSEGVA EEAAGALALL MRQPLGAEAI GKEEAAVTGL
601: MGMMRCGTPR GKENAVAALL ELCRGGGAAV AERVLRAPAI AGLLQTLLFT GTKRARRKAA SLARVFQRRE NAAMRSGGYG FVGNGNGTRD GGSFTTDVSV
701: PMSISISVPV L

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.