Factsheet for Os02t0234300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	Os01t0267900-01	AT2G41100.1	17360592
AT1G29340.1	Os01t0279300-01	AT2G41100.1	17360592
AT1G29340.1	Os01t0810300-01	AT2G41100.1	17360592
AT1G29340.1	Os03t0319300-01	AT2G41100.1	17360592
AT1G29340.1	Os05t0491000-01	AT2G41100.1	17360592
AT1G29340.1	Os05t0491100-01	AT2G41100.1	17360592
AT1G29340.1	Os07t0687200-02	AT2G41100.1	17360592
AT1G29340.1	Os12t0603800-00	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G222200.1	Wheat	cytosol	62.82	87.11
TraesCS6D01G180400.1	Wheat	plastid	84.34	67.59
TraesCS6A01G190700.1	Wheat	plastid	84.34	67.59
EES04812	Sorghum	plastid	84.51	67.35
Zm00001d016225_P001	Maize	plastid	84.34	67.22
Zm00001d053544_P001	Maize	mitochondrion, plastid	79.35	65.39
HORVU6Hr1G041430.8	Barley	mitochondrion	83.82	59.1
GSMUA_Achr7P09440_001	Banana	mitochondrion	48.36	44.04
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.91	43.94
GSMUA_Achr9P28820_001	Banana	mitochondrion	43.03	41.74
KRH11061	Soybean	mitochondrion, plastid	49.91	40.5
KRH21208	Soybean	mitochondrion	49.57	40.22
CDX90186	Canola	mitochondrion	48.54	39.55
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	49.23	39.5
KRH42917	Soybean	mitochondrion	48.54	39.44
VIT_10s0003g01730.t01	Wine grape	mitochondrion	49.23	39.39
KRH59027	Soybean	mitochondrion	48.36	39.3
PGSC0003DMT400073254	Potato	cytosol	48.88	39.23
Bra010834.1-P	Field mustard	mitochondrion	48.19	38.94
CDY43332	Canola	mitochondrion	48.19	38.94
AT1G29340.1	Thale cress	plastid	48.36	38.55
Bra032309.1-P	Field mustard	plastid	46.47	38.35
CDX94661	Canola	plastid	46.82	38.26
CDY48332	Canola	mitochondrion, plastid	46.3	38.21
GSMUA_Achr10P...	Banana	mitochondrion	29.43	37.83
CDX99816	Canola	plastid	46.99	37.71
CDY43686	Canola	plastid	39.24	34.49
Bra021899.1-P	Field mustard	plastid	38.9	34.19
CDY37666	Canola	cytosol, plastid	38.55	33.89
Os12t0570000-01	Rice	cytosol	29.09	32.69
Os06t0726900-00	Rice	cytosol	19.45	29.74
Os05t0476700-01	Rice	plastid	33.73	28.95
Os02t0488600-01	Rice	cytosol, nucleus	21.0	28.84
Os06t0102700-01	Rice	plasma membrane	29.6	28.48
Os01t0823900-01	Rice	plastid	33.05	28.24
Os07t0587500-01	Rice	cytosol	17.04	27.35
Os02t0732200-01	Rice	cytosol	28.06	25.59
Os08t0481200-01	Rice	cytosol	28.23	25.55
Os04t0348400-01	Rice	cytosol	19.62	24.84
Os07t0584900-01	Rice	plastid	19.62	24.41
Os03t0275900-01	Rice	cytosol	30.12	24.1
Os03t0435300-00	Rice	cytosol	15.83	23.0
Os09t0378700-00	Rice	plasma membrane, plastid	26.16	21.35
Os08t0415600-00	Rice	cytosol	25.99	21.06
Os08t0110500-01	Rice	plasma membrane	27.88	19.66
Os01t0884400-01	Rice	plasma membrane	25.47	17.66

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0P0VGW6	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAS77804.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009814	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os02g0234300	EnsemblPlants:Os02t0234300-01
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0000DF0619	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

plant U-box-containing protein 4, U-box protein 4Armadillo-like helical domain containing protein. (Os02t0234300-01)

Coordinates

chr2:+:7613261..7615346

Molecular Weight (calculated)

62745.8 Da

IEP (calculated)

7.382

GRAVY (calculated)

-0.041

Length

581 amino acids

Sequence
(BLAST)

001: LDVLPAASLR LSHDATGLLD LLRAHCRCRA PAQYHDPDEA ALRERLMDAL RQFDLGQPPD HPSLQSLLAD MGISTAASCR AEIDYLEEQI LSQEEDTDLP
101: LVGSVLALLR YCLFAVFDPS NAKALRDWPL SGNRQRLLSI GGGDDTSFSV PKEFSCPISL DLMRDPVVAS TGQTYDRPSI IQWIEEGHST CPNSGQTLAD
201: HRLVPNRALR SLISQWCGVY GLQYDSPESN EGMAECVAAS CSSRAAMEAN KATARILVRM LEDGSENVKA VAAKEIRLLA KTGKQNRAFI ADLGAIPLLC
301: RLLLSNDWMA QENAVTALLN LSIFEPNKGR IMEQEGCLRL IVGVLQNGWT TEAKENAAAT LFSLSVVHNF KKLIMNEPGA VEELASMLTK GTSRGKKDAV
401: MALFNLSTHP ESSARMLESC AVVALIQSLR NDTVSEEAAG ALALLMKQPS IVHLVGSSET VITSLVGLMR RGTPKGKENA VSALYEICRR GGSALVQRVA
501: KIPGLNTVIQ TITLNGTKRA KKKASLIVKM CQRSQMPSAM ALGSTLTVVD RSLVGNNTLR RAASFGSGEL SNPISISVQV P

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.