Factsheet for AT1G29340.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43332	Canola	mitochondrion	86.15	87.34
CDX90186	Canola	mitochondrion	85.19	87.1
Bra010834.1-P	Field mustard	mitochondrion	85.46	86.65
CDX94661	Canola	plastid	83.13	85.23
Bra032309.1-P	Field mustard	plastid	81.48	84.38
CDY48332	Canola	mitochondrion, plastid	81.48	84.38
CDX99816	Canola	plastid	82.03	82.6
KRH21208	Soybean	mitochondrion	70.1	71.37
KRH11061	Soybean	mitochondrion, plastid	70.1	71.37
KRH59027	Soybean	mitochondrion	69.0	70.35
VIT_10s0003g01730.t01	Wine grape	mitochondrion	67.9	68.18
KRH42917	Soybean	mitochondrion	66.8	68.11
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	67.35	67.82
PGSC0003DMT400073254	Potato	cytosol	66.94	67.4
GSMUA_Achr7P09440_001	Banana	mitochondrion	48.83	55.8
GSMUA_Achr2P15530_001	Banana	mitochondrion	50.21	55.45
GSMUA_Achr10P...	Banana	mitochondrion	32.78	52.88
GSMUA_Achr9P28820_001	Banana	mitochondrion	43.35	52.75
TraesCS6B01G222200.1	Wheat	cytosol	30.18	52.51
Os02t0234300-01	Rice	cytosol	38.55	48.36
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.99	46.52
Zm00001d016225_P001	Maize	plastid	46.5	46.5
EES04812	Sorghum	plastid	45.95	45.95
TraesCS6D01G180400.1	Wheat	plastid	43.48	43.72
TraesCS6A01G190700.1	Wheat	plastid	43.48	43.72
HORVU6Hr1G041430.8	Barley	mitochondrion	43.48	38.47
AT5G01830.1	Thale cress	plastid	34.16	36.94
AT3G54850.1	Thale cress	cytosol	28.94	33.39
AT3G46510.1	Thale cress	cytosol	29.49	32.58
AT1G23030.1	Thale cress	cytosol	27.3	32.52
AT1G71020.1	Thale cress	cytosol	27.85	32.32
AT2G28830.1	Thale cress	endoplasmic reticulum	25.38	31.79
AT5G42340.1	Thale cress	cytosol	27.16	30.0
AT3G01400.1	Thale cress	cytosol	14.27	29.3
AT5G58680.1	Thale cress	cytosol	13.85	28.29
AT3G07360.1	Thale cress	cytosol	17.7	28.04
AT5G18320.1	Thale cress	cytosol	17.15	27.29
AT1G60190.1	Thale cress	cytosol, plastid	25.24	26.82
AT5G67340.1	Thale cress	cytosol	25.24	26.03
AT1G10560.1	Thale cress	cytosol	24.28	25.39
AT4G16490.1	Thale cress	plastid	15.91	24.58
AT5G18340.1	Thale cress	nucleus	15.23	24.34
AT2G23140.1	Thale cress	cytosol	27.3	24.0
AT5G18330.1	Thale cress	cytosol	14.4	23.6
AT3G54790.1	Thale cress	cytosol	24.01	23.03

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:839808	UniProt:A0A178WA68	ProteinID:AAG51726.1
ProteinID:AEE31074.1	InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT1G29340	EnsemblPlantsGene:AT1G29340	RefSeq:AT1G29340
TAIR:AT1G29340	RefSeq:AT1G29340-TAIR-G	EnsemblPlants:AT1G29340.1	TAIR:AT1G29340.1	EMBL:AY064045	EMBL:AY150512
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_174228.1	ProteinID:OAP14661.1	PFAM:PF00514	PFAM:PF04564
PO:PO:0000013	PO:PO:0000037	PO:PO:0000056	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	Symbol:PUB17	UniProt:Q9C7R6	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00000ABFEA	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]

Coordinates

chr1:+:10264043..10266917

Molecular Weight (calculated)

79838.0 Da

IEP (calculated)

7.519

GRAVY (calculated)

-0.026

Length

729 amino acids

Sequence
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.