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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007105.1-P Field mustard cytosol 87.97 87.7
CDX78273 Canola cytosol 87.66 87.38
KRH04403 Soybean mitochondrion 41.3 72.1
VIT_13s0019g04710.t01 Wine grape cytosol 66.46 66.88
Solyc11g008390.1.1 Tomato cytosol 64.4 65.22
KRG91959 Soybean cytosol 65.03 65.13
PGSC0003DMT400019235 Potato cytosol 63.92 64.74
KRH34817 Soybean cytosol 64.72 64.72
CDX73439 Canola plastid 87.66 61.49
TraesCS7A01G001900.1 Wheat cytosol 51.42 61.32
HORVU7Hr1G000780.1 Barley cytosol 54.27 58.14
TraesCS7D01G001600.2 Wheat cytosol, plastid 54.91 57.64
EER87680 Sorghum cytosol 54.75 57.57
Os06t0102700-01 Rice plasma membrane 54.59 57.12
GSMUA_Achr3P00280_001 Banana cytosol 53.64 56.22
Zm00001d045632_P004 Maize cytosol, mitochondrion 54.11 54.29
TraesCS4A01G498700.1 Wheat plastid 54.27 54.19
GSMUA_Achr1P24290_001 Banana cytosol 50.95 52.7
AT3G46510.1 Thale cress cytosol 52.37 50.15
AT2G28830.1 Thale cress endoplasmic reticulum 44.62 48.45
AT1G23030.1 Thale cress cytosol 40.51 41.83
AT1G71020.1 Thale cress cytosol 41.14 41.4
AT5G42340.1 Thale cress cytosol 38.77 37.12
AT3G01400.1 Thale cress cytosol 20.09 35.77
AT3G07360.1 Thale cress cytosol 25.63 35.22
AT5G58680.1 Thale cress cytosol 18.99 33.61
AT5G18320.1 Thale cress cytosol 23.1 31.88
AT5G67340.1 Thale cress cytosol 33.39 29.84
AT3G54790.1 Thale cress cytosol 34.81 28.95
AT1G29340.1 Thale cress plastid 33.39 28.94
AT5G18340.1 Thale cress nucleus 20.57 28.51
AT2G23140.1 Thale cress cytosol 36.71 27.99
AT4G16490.1 Thale cress plastid 20.73 27.75
AT5G18330.1 Thale cress cytosol 19.46 27.64
AT5G01830.1 Thale cress plastid 28.96 27.15
AT1G60190.1 Thale cress cytosol, plastid 24.21 22.3
AT1G10560.1 Thale cress cytosol 23.26 21.09
Protein Annotations
Gene3D:1.25.10.10MapMan:19.2.2.1.5.2.1PDB:1T1HGene3D:3.30.40.10EntrezGene:824650UniProt:A0A178V9F4
ProteinID:AEE79300.1InterPro:ARM-likeInterPro:ARM-type_foldArrayExpress:AT3G54850EnsemblPlantsGene:AT3G54850RefSeq:AT3G54850
TAIR:AT3G54850RefSeq:AT3G54850-TAIR-GEnsemblPlants:AT3G54850.1TAIR:AT3G54850.1Symbol:ATPUB14EMBL:AY065279
EMBL:AY096530InterPro:ArmadilloUnigene:At.28098ProteinID:CAB41099.1GO:GO:0003674GO:GO:0003824
GO:GO:0004842GO:GO:0005102GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538GO:GO:0070696InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083RefSeq:NP_191045.2ProteinID:OAP01572.1PFAM:PF00514
PFAM:PF04564PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016
PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50176PFscan:PS51698
PANTHER:PTHR23315PANTHER:PTHR23315:SF111UniProt:Q8VZ40SMART:SM00185SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniParc:UPI00000A6C0FInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg:
Description
PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
Coordinates
chr3:+:20321353..20324020
Molecular Weight (calculated)
69401.1 Da
IEP (calculated)
4.810
GRAVY (calculated)
-0.149
Length
632 amino acids
Sequence
(BLAST)
001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.