Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74050 | Canola | cytosol | 88.26 | 89.04 |
| CDY28059 | Canola | cytosol | 89.13 | 88.74 |
| Bra001247.1-P | Field mustard | cytosol | 87.83 | 88.6 |
| CDY71737 | Canola | cytosol | 88.91 | 88.53 |
| Bra029642.1-P | Field mustard | cytosol | 88.26 | 87.88 |
| CDY08002 | Canola | cytosol | 86.52 | 87.47 |
| Bra040374.1-P | Field mustard | cytosol | 85.65 | 87.36 |
| VIT_00s0524g00030.t01 | Wine grape | cytosol | 60.43 | 61.92 |
| PGSC0003DMT400016998 | Potato | cytosol | 60.43 | 61.92 |
| Solyc09g056450.2.1 | Tomato | cytosol | 59.57 | 61.02 |
| KRH46608 | Soybean | cytosol | 59.78 | 59.65 |
| KRG99581 | Soybean | cytosol | 59.35 | 59.22 |
| VIT_04s0043g00840.t01 | Wine grape | cytosol | 57.83 | 58.46 |
| KRH68828 | Soybean | cytosol | 51.74 | 55.35 |
| KRG97080 | Soybean | cytosol, nucleus | 52.61 | 55.0 |
| GSMUA_Achr6P06560_001 | Banana | cytosol | 43.26 | 53.35 |
| GSMUA_Achr10P... | Banana | cytosol | 41.52 | 51.07 |
| GSMUA_Achr9P01670_001 | Banana | cytosol | 50.87 | 50.21 |
| Os02t0488600-01 | Rice | cytosol, nucleus | 44.35 | 48.23 |
| KRG92593 | Soybean | cytosol | 46.3 | 48.08 |
| PGSC0003DMT400011486 | Potato | cytosol | 37.17 | 47.9 |
| Solyc04g050780.1.1 | Tomato | cytosol | 43.48 | 46.4 |
| EES06804 | Sorghum | cytosol | 45.87 | 45.47 |
| Solyc04g050770.1.1 | Tomato | cytosol | 43.48 | 45.15 |
| TraesCS2A01G276400.1 | Wheat | nucleus | 45.0 | 45.0 |
| TraesCS2B01G294100.1 | Wheat | nucleus | 45.0 | 45.0 |
| TraesCS2D01G275400.1 | Wheat | nucleus | 45.0 | 45.0 |
| Zm00001d016501_P001 | Maize | cytosol | 45.43 | 44.95 |
| PGSC0003DMT400039084 | Potato | cytosol | 43.26 | 44.92 |
| HORVU2Hr1G067610.6 | Barley | cytosol | 45.87 | 44.51 |
| Os04t0348400-01 | Rice | cytosol | 43.91 | 44.01 |
| AT5G18320.1 | Thale cress | cytosol | 38.48 | 38.65 |
| AT5G18330.1 | Thale cress | cytosol | 33.7 | 34.83 |
| AT5G18340.1 | Thale cress | nucleus | 34.35 | 34.65 |
| AT3G01400.1 | Thale cress | cytosol | 21.52 | 27.89 |
| AT5G58680.1 | Thale cress | cytosol | 20.22 | 26.05 |
| AT3G54850.1 | Thale cress | cytosol | 35.22 | 25.63 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 32.17 | 25.43 |
| AT1G23030.1 | Thale cress | cytosol | 33.7 | 25.33 |
| AT1G71020.1 | Thale cress | cytosol | 33.7 | 24.68 |
| AT5G42340.1 | Thale cress | cytosol | 34.35 | 23.94 |
| AT3G46510.1 | Thale cress | cytosol | 33.48 | 23.33 |
| AT4G16490.1 | Thale cress | plastid | 22.17 | 21.61 |
| AT5G67340.1 | Thale cress | cytosol | 32.61 | 21.22 |
| AT3G54790.1 | Thale cress | cytosol | 31.52 | 19.08 |
| AT5G01830.1 | Thale cress | plastid | 27.17 | 18.55 |
| AT2G23140.1 | Thale cress | cytosol | 32.83 | 18.21 |
| AT1G29340.1 | Thale cress | plastid | 28.04 | 17.7 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 23.91 | 16.04 |
| AT1G10560.1 | Thale cress | cytosol | 22.83 | 15.06 |
Protein Annotations
| MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | EntrezGene:819924 | UniProt:A0A178VJC7 | ProteinID:AAF02146.1 | ProteinID:AEE74532.1 |
| ProteinID:AEE74533.1 | ProteinID:AEE74534.1 | ProteinID:ANM65399.1 | ProteinID:ANM65400.1 | ProteinID:ANM65401.1 | ProteinID:ANM65402.1 |
| ProteinID:ANM65403.1 | ProteinID:ANM65404.1 | ProteinID:ANM65405.1 | InterPro:ARM-type_fold | ArrayExpress:AT3G07360 | EnsemblPlantsGene:AT3G07360 |
| RefSeq:AT3G07360 | TAIR:AT3G07360 | RefSeq:AT3G07360-TAIR-G | EnsemblPlants:AT3G07360.1 | TAIR:AT3G07360.1 | EMBL:AY075636 |
| Unigene:At.21635 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005102 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0070696 | GO:GO:0071215 | InterPro:IPR003613 | InterPro:IPR013083 |
| RefSeq:NP_001030656.1 | RefSeq:NP_001319492.1 | RefSeq:NP_001327371.1 | RefSeq:NP_001327372.1 | RefSeq:NP_001327373.1 | RefSeq:NP_001327374.1 |
| RefSeq:NP_001327375.1 | RefSeq:NP_001327376.1 | RefSeq:NP_566304.1 | RefSeq:NP_850531.1 | ProteinID:OAP04990.1 | ProteinID:OAP04992.1 |
| PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF227 | Symbol:PUB9 |
| UniProt:Q9SRT0 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI0000042345 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
Coordinates
chr3:+:2354640..2356865
Molecular Weight (calculated)
51282.1 Da
IEP (calculated)
8.481
GRAVY (calculated)
-0.308
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.