CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68828	Soybean	cytosol	60.72	62.56
KRG97080	Soybean	cytosol, nucleus	60.27	60.68
VIT_04s0043g00840.t01	Wine grape	cytosol	56.21	54.73
KRH46608	Soybean	cytosol	51.92	49.89
KRG99581	Soybean	cytosol	51.24	49.24
GSMUA_Achr6P06560_001	Banana	cytosol	41.31	49.06
Bra001247.1-P	Field mustard	cytosol	48.53	47.15
Bra040374.1-P	Field mustard	cytosol	47.86	47.01
CDX74050	Canola	cytosol	48.08	46.71
CDY08002	Canola	cytosol	47.63	46.37
AT3G07360.1	Thale cress	cytosol	48.08	46.3
CDY28059	Canola	cytosol	48.08	46.1
CDY71737	Canola	cytosol	48.08	46.1
GSMUA_Achr10P...	Banana	cytosol	38.83	45.99
GSMUA_Achr9P01670_001	Banana	cytosol	48.31	45.92
Bra029642.1-P	Field mustard	cytosol	47.86	45.89
Solyc04g050780.1.1	Tomato	cytosol	44.47	45.71
PGSC0003DMT400011486	Potato	cytosol	36.57	45.38
PGSC0003DMT400039084	Potato	cytosol	44.7	44.7
Os02t0488600-01	Rice	cytosol, nucleus	42.66	44.68
Solyc04g050770.1.1	Tomato	cytosol	44.02	44.02
EES06804	Sorghum	cytosol	42.89	40.95
Zm00001d016501_P001	Maize	cytosol	42.66	40.65
Os04t0348400-01	Rice	cytosol	40.18	38.78
TraesCS2A01G276400.1	Wheat	nucleus	39.28	37.83
TraesCS2B01G294100.1	Wheat	nucleus	39.28	37.83
TraesCS2D01G275400.1	Wheat	nucleus	39.28	37.83
CDY68352	Canola	cytosol	38.37	37.28
HORVU2Hr1G067610.6	Barley	cytosol	39.73	37.13
AT5G18320.1	Thale cress	cytosol	37.47	36.24
CDY38506	Canola	cytosol	37.25	36.18
KRH17146	Soybean	cytosol	18.74	34.87
KRH04403	Soybean	mitochondrion	27.77	33.98
KRH15451	Soybean	cytosol	20.77	33.95
AT5G18330.1	Thale cress	cytosol	31.83	31.69
AT5G18340.1	Thale cress	nucleus	31.38	30.48
KRH05594	Soybean	cytosol	23.93	30.11
CDX70810	Canola	cytosol	30.25	28.39
Bra006451.1-P	Field mustard	cytosol	29.35	27.84
KRH52088	Soybean	cytosol	20.54	27.83
CDY51235	Canola	extracellular, golgi	29.35	25.05
KRG91959	Soybean	cytosol	34.54	24.25
KRH34817	Soybean	cytosol	34.31	24.05
KRG89279	Soybean	cytosol	34.99	23.81
KRH50347	Soybean	nucleus	34.76	23.55
KRH29807	Soybean	cytosol	34.09	22.84
KRH24807	Soybean	cytosol	34.09	22.81
KRH51173	Soybean	cytosol	21.22	21.96
KRH40395	Soybean	cytosol	31.38	21.89
KRH01984	Soybean	cytosol	20.77	21.65
KRH36562	Soybean	plastid	22.12	21.4
KRH11541	Soybean	plastid	21.9	21.23
KRH00831	Soybean	cytosol	30.02	20.94
KRG99865	Soybean	cytosol	28.22	20.26
KRH59027	Soybean	mitochondrion	31.15	19.3
KRH11061	Soybean	mitochondrion, plastid	31.15	19.27
KRH33490	Soybean	cytosol	22.57	19.05
KRH21208	Soybean	mitochondrion	30.25	18.72
KRH72794	Soybean	plasma membrane	33.63	18.33
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.63	18.3
KRH42917	Soybean	mitochondrion	29.12	18.04
KRH67390	Soybean	cytosol, plastid	34.09	17.64
KRH73275	Soybean	cytosol	20.09	17.49
KRG98177	Soybean	cytosol	33.18	17.48
KRH30135	Soybean	cytosol	32.73	17.3
KRH54418	Soybean	cytosol, plastid	26.64	17.28
KRH76105	Soybean	cytosol, plastid	27.31	17.24
KRH03317	Soybean	cytosol, plastid	25.96	17.01
KRH65448	Soybean	plastid	16.7	15.16
KRH69547	Soybean	cytosol, plastid	23.7	14.73
KRH32190	Soybean	cytosol	21.9	14.63
Bra002153.1-P	Field mustard	cytosol	37.7	12.23
CDX70805	Canola	cytosol	30.7	8.83
CDY51234	Canola	cytosol	31.15	8.33
Bra006452.1-P	Field mustard	cytosol	31.15	8.31

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100806132	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02012763	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_20G220600	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1NIK5	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRG92593	ProteinID:KRG92593	ProteinID:KRG92593.1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00023DCC01	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:45570054..45572082

Molecular Weight (calculated)

49658.0 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.178

Length

443 amino acids

Sequence
(BLAST)

001: MVTEEKVHAL KDKLRESVKI IVESDDYTVD AADEAMDALS ALKDLKCTTS LSRNLDDAAV PPHFRCPLSG NLMTDPVILA SGQNFDRAFI QRWLNEVRRI
101: CPKTQQVLSH SILTPNCFLQ NMISLWCKEH GVELPKPVWD IHGEKLAEDH RLHMRSLLYK LSLSVSEQKE AAKELRQLTK RIPTFRTLFG DSEVIQLMLR
201: PLSPGTASVD PELHEDLITT LLNLSIHDNN KRVLAEDEKV ISLLIESLKY SGTVETRSNA AAAIFSMSAI DANRHIIGKS GVIKYLVDLL EEGHPPAMRD
301: AASALFKLCY THENKGRTVR EGAVQVILGK IVDHVLVDEL LALLALLSSH HMAVEALVNH GAVPFLLDIL REKENTSEER IKENCVVILC TICFNDREKR
401: REIGEDEMVN GTLYELAQRG NSRAQRKARA ILESLHVSQS STS

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.