Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001006.1-P | Field mustard | plastid | 88.45 | 88.7 |
| CDX74298 | Canola | plastid | 88.17 | 88.42 |
| CDX91947 | Canola | plastid | 87.61 | 88.1 |
| KRH15451 | Soybean | cytosol | 63.66 | 83.39 |
| KRH05594 | Soybean | cytosol | 79.72 | 80.4 |
| Solyc12g088360.1.1 | Tomato | cytosol | 61.41 | 79.27 |
| AT5G58680.1 | Thale cress | cytosol | 79.44 | 78.99 |
| Solyc04g077850.2.1 | Tomato | cytosol | 79.15 | 78.93 |
| PGSC0003DMT400027542 | Potato | cytosol | 78.31 | 78.09 |
| PGSC0003DMT400030161 | Potato | cytosol | 77.18 | 76.54 |
| KRH52088 | Soybean | cytosol | 65.63 | 71.25 |
| VIT_18s0001g09130.t01 | Wine grape | cytosol | 74.65 | 68.3 |
| GSMUA_Achr4P03430_001 | Banana | cytosol | 46.2 | 60.97 |
| GSMUA_Achr6P07710_001 | Banana | cytosol | 58.59 | 58.26 |
| GSMUA_Achr3P18890_001 | Banana | cytosol | 57.46 | 56.82 |
| Zm00001d021978_P001 | Maize | cytosol | 57.75 | 56.63 |
| Zm00001d006726_P001 | Maize | cytosol | 57.18 | 56.39 |
| Os07t0587500-01 | Rice | cytosol | 57.46 | 56.35 |
| EER97464 | Sorghum | cytosol | 57.46 | 56.35 |
| TraesCS2B01G213900.1 | Wheat | cytosol | 56.34 | 55.4 |
| TraesCS2D01G194400.1 | Wheat | cytosol | 56.34 | 55.4 |
| GSMUA_Achr10P... | Banana | cytosol | 58.03 | 55.38 |
| TraesCS2A01G193000.1 | Wheat | cytosol | 55.77 | 54.85 |
| GSMUA_Achr4P14130_001 | Banana | cytosol | 47.61 | 48.7 |
| GSMUA_Achr4P10960_001 | Banana | endoplasmic reticulum | 54.65 | 47.78 |
| GSMUA_Achr7P26200_001 | Banana | extracellular, golgi | 53.8 | 46.14 |
| GSMUA_Achr5P16030_001 | Banana | cytosol | 57.18 | 43.1 |
| Os03t0435300-00 | Rice | cytosol | 41.69 | 37.0 |
| AT4G16490.1 | Thale cress | plastid | 48.17 | 36.23 |
| Zm00001d003967_P001 | Maize | plastid | 44.23 | 34.89 |
| AT3G07360.1 | Thale cress | cytosol | 27.89 | 21.52 |
| AT1G23030.1 | Thale cress | cytosol | 35.77 | 20.75 |
| AT1G71020.1 | Thale cress | cytosol | 36.34 | 20.54 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 33.24 | 20.27 |
| AT3G54850.1 | Thale cress | cytosol | 35.77 | 20.09 |
| AT5G67340.1 | Thale cress | cytosol | 40.0 | 20.08 |
| AT3G54790.1 | Thale cress | cytosol | 41.41 | 19.34 |
| AT3G46510.1 | Thale cress | cytosol | 35.77 | 19.24 |
| AT2G23140.1 | Thale cress | cytosol | 44.79 | 19.18 |
| AT5G18320.1 | Thale cress | cytosol | 24.51 | 19.0 |
| AT5G42340.1 | Thale cress | cytosol | 33.24 | 17.88 |
| AT5G18330.1 | Thale cress | cytosol | 20.56 | 16.4 |
| AT5G18340.1 | Thale cress | nucleus | 20.0 | 15.57 |
| AT1G29340.1 | Thale cress | plastid | 29.3 | 14.27 |
| AT1G10560.1 | Thale cress | cytosol | 22.82 | 11.62 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 22.25 | 11.52 |
| AT5G01830.1 | Thale cress | plastid | 21.69 | 11.42 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | EntrezGene:821320 | UniProt:A0A178VBZ4 | ProteinID:AAF24610.1 | ProteinID:AEE73661.1 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G01400 | EnsemblPlantsGene:AT3G01400 | RefSeq:AT3G01400 | TAIR:AT3G01400 |
| RefSeq:AT3G01400-TAIR-G | EnsemblPlants:AT3G01400.1 | TAIR:AT3G01400.1 | InterPro:Armadillo | Unigene:At.20281 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | InterPro:IPR000225 | InterPro:IPR011989 | RefSeq:NP_566136.1 | ProteinID:OAP02835.1 | PFAM:PF00514 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50176 |
| PANTHER:PTHR23315 | PANTHER:PTHR23315:SF64 | UniProt:Q9SGH8 | SMART:SM00185 | SUPFAM:SSF48371 | UniParc:UPI000009EF80 |
| SEG:seg | : | : | : | : | : |
Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
Coordinates
chr3:+:151725..153263
Molecular Weight (calculated)
38278.2 Da
IEP (calculated)
6.769
GRAVY (calculated)
-0.113
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.