Factsheet for Bra001006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74298	Canola	plastid	99.15	99.15
Bra040513.1-P	Field mustard	cytosol	67.23	90.49
AT3G01400.1	Thale cress	cytosol	88.7	88.45
KRH15451	Soybean	cytosol	62.99	82.29
Bra020360.1-P	Field mustard	cytosol	79.1	79.32
KRH05594	Soybean	cytosol	78.81	79.26
Solyc04g077850.2.1	Tomato	cytosol	79.1	78.65
Solyc12g088360.1.1	Tomato	cytosol	60.73	78.18
PGSC0003DMT400027542	Potato	cytosol	78.25	77.81
PGSC0003DMT400030161	Potato	cytosol	75.42	74.58
KRH52088	Soybean	cytosol	63.84	69.11
VIT_18s0001g09130.t01	Wine grape	cytosol	73.16	66.75
GSMUA_Achr4P03430_001	Banana	cytosol	46.61	61.34
GSMUA_Achr3P18890_001	Banana	cytosol	59.32	58.5
GSMUA_Achr6P07710_001	Banana	cytosol	58.76	58.26
Os07t0587500-01	Rice	cytosol	59.04	57.73
Zm00001d006726_P001	Maize	cytosol	57.91	56.94
Zm00001d021978_P001	Maize	cytosol	58.19	56.91
EER97464	Sorghum	cytosol	58.19	56.91
TraesCS2B01G213900.1	Wheat	cytosol	57.91	56.79
TraesCS2D01G194400.1	Wheat	cytosol	57.91	56.79
TraesCS2A01G193000.1	Wheat	cytosol	57.63	56.51
GSMUA_Achr10P...	Banana	cytosol	58.47	55.65
GSMUA_Achr4P14130_001	Banana	cytosol	48.02	48.99
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	55.65	48.52
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	53.95	46.14
GSMUA_Achr5P16030_001	Banana	cytosol	58.47	43.95
Os03t0435300-00	Rice	cytosol	43.79	38.75
Bra012713.1-P	Field mustard	cytosol	49.72	38.68
Bra038470.1-P	Field mustard	plastid	48.87	36.97
Zm00001d003967_P001	Maize	plastid	45.2	35.56
Bra001247.1-P	Field mustard	cytosol	27.97	21.71
Bra029642.1-P	Field mustard	cytosol	27.97	21.43
Bra024559.1-P	Field mustard	cytosol, plasma membrane	36.72	21.35
Bra012355.1-P	Field mustard	plasma membrane	35.31	21.26
Bra040374.1-P	Field mustard	cytosol	26.84	21.06
Bra007097.1-P	Field mustard	cytosol	40.68	20.51
Bra007105.1-P	Field mustard	cytosol	36.16	20.19
Bra014787.1-P	Field mustard	cytosol	40.96	19.65
Bra016165.1-P	Field mustard	cytosol, plasma membrane	33.9	19.48
Bra037117.1-P	Field mustard	cytosol, plastid	39.27	18.94
Bra027977.1-P	Field mustard	cytosol	34.75	18.86
Bra033820.1-P	Field mustard	cytosol	34.18	18.39
Bra012155.1-P	Field mustard	cytosol	34.18	18.36
Bra018212.1-P	Field mustard	cytosol	33.33	18.13
Bra035665.1-P	Field mustard	cytosol	32.77	17.79
Bra006451.1-P	Field mustard	cytosol	20.9	15.85
Bra032309.1-P	Field mustard	plastid	29.66	14.91
Bra032180.1-P	Field mustard	cytosol	24.29	14.73
Bra010834.1-P	Field mustard	mitochondrion	29.1	14.33
Bra021899.1-P	Field mustard	plastid	26.27	14.07
Bra001998.1-P	Field mustard	cytosol	23.16	13.74
Bra019022.1-P	Field mustard	cytosol	23.45	12.31
Bra019924.1-P	Field mustard	mitochondrion	23.45	11.94
Bra031521.1-P	Field mustard	cytosol	22.03	11.52
Bra002153.1-P	Field mustard	cytosol	24.01	6.22
Bra006452.1-P	Field mustard	cytosol	22.32	4.76

Protein Annotations

EnsemblPlants:Bra001006.1	EnsemblPlants:Bra001006.1-P	EnsemblPlantsGene:Bra001006	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF64	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI00025407EC	UniProt:M4C9X7	MapMan:35.1	:	:

Description

AT3G01400 (E=4e-149) | armadillo/beta-catenin repeat family protein

Coordinates

chrA03:-:14356358..14357422

Molecular Weight (calculated)

37769.3 Da

IEP (calculated)

6.767

GRAVY (calculated)

-0.073

Length

354 amino acids

Sequence
(BLAST)

001: MESDNSAGFT YLGRNFSNLS VNDHSSAFSD CNSDRSGEFP SASSESRRLL LSCASDNSDD LIRHLVAHLD SSSSSVDEQK QAAMEIRLLS KNKPENRIKI
101: ANAGAVKPLI SLISSSDPQL QEYGVTAILN LSLCDENKDL IASSGAIKPL VRALKMGTPT AKENAACALL RLSQVEDNKV AIGRSGAIPL LVSLLETGGF
201: RAKKDASTAL YSLCSAKENK LRAVQAGIMK PLVELMADFG SNMVDKSAFV MSLLMSVPES KPALVEEGGV PVLVEIVEVG TQRQKEIAVS ILLQLCEESV
301: VYRTMVAREG AIPPLVALTQ AGTSRAKQKA EALIEFLRQP RSGVSSNGGR SSQL

Best Arabidopsis Sequence Match ( AT3G01400.1 )
(BLAST)

001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.