Factsheet for Bra024559.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21412	Canola	cytosol, endoplasmic reticulum	99.67	99.84
CDY04747	Canola	cytosol, golgi	71.26	98.41
AT1G23030.1	Thale cress	cytosol	90.8	90.36
Bra012355.1-P	Field mustard	plasma membrane	84.89	87.93
Bra016165.1-P	Field mustard	cytosol, plasma membrane	77.34	76.46
KRH50347	Soybean	nucleus	63.55	59.17
KRG89279	Soybean	cytosol	63.22	59.14
VIT_01s0011g04770.t01	Wine grape	cytosol	61.9	59.0
PGSC0003DMT400015349	Potato	cytosol	61.08	57.5
Solyc04g007640.2.1	Tomato	cytosol	60.43	56.88
PGSC0003DMT400078473	Potato	cytosol	59.11	55.38
Solyc05g008230.2.1	Tomato	cytosol	58.78	55.08
Zm00001d000381_P001	Maize	cytosol	51.56	49.22
EES07310	Sorghum	cytosol	51.4	49.06
TraesCS6A01G293600.1	Wheat	cytosol	50.9	48.36
TraesCS6D01G274500.1	Wheat	cytosol	50.9	48.36
TraesCS6B01G324000.1	Wheat	cytosol	50.9	48.21
Os02t0732200-01	Rice	cytosol	50.41	48.19
Bra040513.1-P	Field mustard	cytosol	20.36	47.15
Bra018212.1-P	Field mustard	cytosol	44.66	41.78
GSMUA_Achr9P15600_001	Banana	cytosol	46.31	41.72
Bra033820.1-P	Field mustard	cytosol	44.01	40.73
Bra007105.1-P	Field mustard	cytosol	42.2	40.54
Bra035665.1-P	Field mustard	cytosol	42.04	39.26
HORVU6Hr1G073280.1	Barley	cytosol	50.74	38.48
Bra020360.1-P	Field mustard	cytosol	21.51	37.11
Bra001006.1-P	Field mustard	plastid	21.35	36.72
Bra001247.1-P	Field mustard	cytosol	25.94	34.65
Bra029642.1-P	Field mustard	cytosol	26.27	34.63
Bra040374.1-P	Field mustard	cytosol	25.12	33.92
Bra027977.1-P	Field mustard	cytosol	35.3	32.98
Bra038470.1-P	Field mustard	plastid	21.18	27.56
Bra012713.1-P	Field mustard	cytosol	20.53	27.47
Bra010834.1-P	Field mustard	mitochondrion	32.35	27.4
Bra021899.1-P	Field mustard	plastid	29.72	27.38
Bra037117.1-P	Field mustard	cytosol, plastid	32.84	27.25
Bra032309.1-P	Field mustard	plastid	31.36	27.13
Bra001998.1-P	Field mustard	cytosol	25.78	26.3
Bra007097.1-P	Field mustard	cytosol	29.72	25.78
Bra012155.1-P	Field mustard	cytosol	27.59	25.49
Bra006451.1-P	Field mustard	cytosol	19.21	25.05
Bra032180.1-P	Field mustard	cytosol	23.97	25.0
Bra019022.1-P	Field mustard	cytosol	27.59	24.93
Bra014787.1-P	Field mustard	cytosol	30.05	24.8
Bra019924.1-P	Field mustard	mitochondrion	26.11	22.88
Bra031521.1-P	Field mustard	cytosol	24.14	21.71
Bra002153.1-P	Field mustard	cytosol	22.0	9.81
Bra006452.1-P	Field mustard	cytosol	19.05	6.98

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra024559	EnsemblPlants:Bra024559.1	EnsemblPlants:Bra024559.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4E704	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002542A0D	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G23030 (E=9e-302) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA09:-:24411610..24413828

Molecular Weight (calculated)

66697.3 Da

IEP (calculated)

8.186

GRAVY (calculated)

-0.140

Length

609 amino acids

Sequence
(BLAST)

001: MAGVNVSPAS LLELIAEIAE IPINAGVFKK DCADLTRRVC LLTHLVEEIR DSNPVDSAAA SSSENDWWSD LVVGLQAAKR LLSSATRFQA RDSSDGAVKR
101: ISFQLQCITW RLEKALSNLP YDLYDISDEV GEQVELARSQ LRRAMQRYGS LNSNKFLNGL SEPMERDAFS NVKIKAEEEK LEGISETVVP FGEEKKQLRK
201: SSSISLAFYL SKDADTDRLD KMVTKNTDES KKSDKLTIPV DFLCPVSLEL MKDPVIVATG QTYERAYIQR WIDCGNLTCP KTQQKLENFT LTPNYVLRSL
301: ISRWCAEHNI EQPAGYINGR ARNRGDMSVI KALVHKLSSR SVEERRNAVS EIRSLSKRST DNRILIAEAG AIPVLVNLLT SEDVATQENA ITCVLNLSIY
401: DNNKELIMFA GAVTSIVQVL RAGTMEAREN AAATLFSLSL ADENKIIIGG SGAIPALVDL LENGTPRGKK DAATALFNLC IYQGNKGRAV RAGIVPALVK
501: MLSDSSSHRM VDEALTILSV LASNLDAKAA IVKANTLPAL IGILQTGQAR NRENAAAILL SLCKRDTEKL VSIGRLGAVV PLMDLSNNGT ERGKRKATSL
601: LELLRKACQ

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.