Factsheet for AT1G60190.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031521.1-P	Field mustard	cytosol	77.26	78.29
CDY24520	Canola	cytosol	76.82	78.19
CDY54132	Canola	cytosol	76.53	77.21
CDY04344	Canola	cytosol	33.53	72.1
CDY04342	Canola	cytosol	34.11	70.27
AT1G10560.1	Thale cress	cytosol	65.6	64.56
VIT_01s0026g00190.t01	Wine grape	cytosol	44.17	44.36
PGSC0003DMT400082693	Potato	cytosol	15.6	43.85
KRH69547	Soybean	cytosol, plastid	43.73	42.08
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	27.7	41.76
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	33.97	41.61
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	41.4	41.46
GSMUA_Achr9P14560_001	Banana	cytosol	30.47	35.73
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	35.42	35.17
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	35.86	35.09
TraesCS2B01G499300.1	Wheat	plasma membrane	35.13	34.98
Os09t0378700-00	Rice	plasma membrane, plastid	36.3	34.97
Zm00001d020332_P001	Maize	cytosol	35.57	34.96
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.71	34.95
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	35.13	34.73
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	35.42	34.66
KXG35540	Sorghum	plasma membrane	36.15	34.64
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	34.69	34.54
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	35.28	34.52
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	35.13	33.75
GSMUA_Achr3P06160_001	Banana	plastid	26.97	32.63
Os08t0415600-00	Rice	cytosol	33.24	31.8
AT5G01830.1	Thale cress	plastid	25.66	26.11
AT1G29340.1	Thale cress	plastid	26.82	25.24
AT3G46510.1	Thale cress	cytosol	24.2	25.15
AT1G23030.1	Thale cress	cytosol	22.01	24.67
AT2G28830.1	Thale cress	endoplasmic reticulum	20.55	24.23
AT3G54850.1	Thale cress	cytosol	22.3	24.21
AT3G07360.1	Thale cress	cytosol	16.04	23.91
AT1G71020.1	Thale cress	cytosol	21.72	23.73
AT5G42340.1	Thale cress	cytosol	21.57	22.42
AT3G01400.1	Thale cress	cytosol	11.52	22.25
AT5G58680.1	Thale cress	cytosol	11.52	22.13
AT5G18320.1	Thale cress	cytosol	13.7	20.52
AT5G67340.1	Thale cress	cytosol	20.12	19.52
AT5G18340.1	Thale cress	nucleus	12.83	19.3
AT4G16490.1	Thale cress	plastid	12.83	18.64
AT3G54790.1	Thale cress	cytosol	20.55	18.55
AT2G23140.1	Thale cress	cytosol	20.41	16.89
AT5G18330.1	Thale cress	cytosol	10.79	16.63

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EntrezGene:842314	ProteinID:AAC24052.1	ProteinID:AEE33665.1
InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT1G60190	EnsemblPlantsGene:AT1G60190	RefSeq:AT1G60190	TAIR:AT1G60190
RefSeq:AT1G60190-TAIR-G	EnsemblPlants:AT1G60190.1	TAIR:AT1G60190.1	InterPro:Armadillo	Unigene:At.66059	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009791	GO:GO:0009987	GO:GO:0010029	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_176225.1
UniProt:O80742	PFAM:PF00514	PFAM:PF04564	PO:PO:0000230	PO:PO:0000293	PO:PO:0007611
PO:PO:0007616	PO:PO:0009005	PO:PO:0009029	PO:PO:0009030	PO:PO:0009046	PO:PO:0009047
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000009FC51	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]

Coordinates

chr1:+:22198266..22200687

Molecular Weight (calculated)

76018.3 Da

IEP (calculated)

6.932

GRAVY (calculated)

-0.072

Length

686 amino acids

Sequence
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.