Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004407.1-P | Field mustard | nucleus, plastid | 96.9 | 97.51 |
| CDY68276 | Canola | nucleus, plastid | 96.9 | 97.51 |
| CDY28576 | Canola | nucleus | 88.54 | 89.94 |
| CDY28577 | Canola | cytosol | 66.87 | 88.89 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 86.69 | 86.15 |
| CDY36943 | Canola | nucleus | 28.48 | 48.68 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 49.85 | 45.61 |
| CDY24170 | Canola | nucleus | 32.82 | 43.62 |
| KRH45889 | Soybean | nucleus | 38.08 | 43.01 |
| KRG99108 | Soybean | nucleus | 35.6 | 42.12 |
| CDY40752 | Canola | cytosol | 21.67 | 39.55 |
| CDX78335 | Canola | nucleus | 20.74 | 38.07 |
| CDX81094 | Canola | nucleus | 20.74 | 37.22 |
| CDX87179 | Canola | nucleus | 24.15 | 36.28 |
| CDY16842 | Canola | nucleus | 23.84 | 35.81 |
| CDY60249 | Canola | cytosol | 22.91 | 35.58 |
| CDY44770 | Canola | cytosol | 24.15 | 34.67 |
| PGSC0003DMT400008728 | Potato | nucleus | 38.39 | 33.42 |
| Solyc05g007420.1.1 | Tomato | nucleus | 39.32 | 33.16 |
| CDY46951 | Canola | nucleus | 23.22 | 32.61 |
| CDY20065 | Canola | cytosol | 26.93 | 32.34 |
| CDY48964 | Canola | nucleus | 21.98 | 32.27 |
| CDY45760 | Canola | nucleus | 24.15 | 32.23 |
| CDY21536 | Canola | nucleus | 23.22 | 31.78 |
| CDY40799 | Canola | nucleus | 22.6 | 31.74 |
| CDX88010 | Canola | nucleus | 24.46 | 31.23 |
| CDY52403 | Canola | nucleus | 28.48 | 30.16 |
| CDY00171 | Canola | nucleus | 25.7 | 30.07 |
| CDY13675 | Canola | nucleus | 28.79 | 29.9 |
| CDX72856 | Canola | nucleus | 29.72 | 28.74 |
| CDX96370 | Canola | nucleus | 29.72 | 28.66 |
| CDY27099 | Canola | nucleus | 24.46 | 28.32 |
| CDX95656 | Canola | nucleus | 25.08 | 27.65 |
| CDY39914 | Canola | nucleus, plastid | 33.13 | 27.16 |
| CDX91612 | Canola | nucleus | 24.15 | 27.08 |
| CDY71135 | Canola | nucleus | 32.82 | 27.04 |
| CDX82193 | Canola | nucleus, plastid | 29.1 | 26.7 |
| CDY53888 | Canola | nucleus | 25.7 | 26.69 |
| CDY03666 | Canola | nucleus, plastid | 29.1 | 26.48 |
| CDX74756 | Canola | nucleus | 26.01 | 25.85 |
| CDY18910 | Canola | nucleus | 25.7 | 25.54 |
Protein Annotations
| MapMan:15.5.19 | EnsemblPlants:CDY01754 | ProteinID:CDY01754 | ProteinID:CDY01754.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00112877001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF40D1 | SEG:seg | : |
Description
BnaC06g27940D
Coordinates
chrLK031929:-:42290..43441
Molecular Weight (calculated)
34381.3 Da
IEP (calculated)
7.446
GRAVY (calculated)
-0.750
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDPDHHQR PNFPLQLLDS SSSSSTSLAI IPSASSSEPN SDPNALSKKP PPKRTSTKDR HTKVEGRGRR IRMPAMCAAR VFQLTRELGH KSDGETIEWL
101: LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SRSSLSAAHL RTTPSNYYFH SPAMAQHHQQ QQLHQVRPKN ESHSCSSSQF VDHNQMGNYL VQSTAGSLPT
201: SQTPATAPFW SSGDSTQNLW AFHHSGDVYN TSSGGGGGSG GAGGGGGVHL MNFPAPFALF SGQPLASGYG GGVGGGGGEH NHYGVLSALN AAYRPVQETE
301: NQQNRDGDHH HNHQEDGSTS HHS
101: LQQAEPAVIA ATGTGTIPAN FTSLNISLRS SRSSLSAAHL RTTPSNYYFH SPAMAQHHQQ QQLHQVRPKN ESHSCSSSQF VDHNQMGNYL VQSTAGSLPT
201: SQTPATAPFW SSGDSTQNLW AFHHSGDVYN TSSGGGGGSG GAGGGGGVHL MNFPAPFALF SGQPLASGYG GGVGGGGGEH NHYGVLSALN AAYRPVQETE
301: NQQNRDGDHH HNHQEDGSTS HHS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.