Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49030.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G49030.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018774.1-P | Field mustard | cytosol | 97.52 | 87.17 |
| CDY62854 | Canola | cytosol | 93.07 | 86.24 |
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 63.37 | 81.53 |
| CDY48592 | Canola | plastid | 64.85 | 74.86 |
| AT1G49030.1 | Thale cress | cytosol | 79.21 | 71.43 |
| CDX92238 | Canola | plasma membrane | 41.09 | 62.41 |
| CDY24480 | Canola | cytosol, extracellular, vacuole | 41.09 | 62.41 |
| CDX92237 | Canola | cytosol | 51.98 | 60.69 |
| CDY70500 | Canola | cytosol | 41.58 | 54.19 |
| CDY71864 | Canola | cytosol | 33.66 | 45.03 |
| CDY51779 | Canola | endoplasmic reticulum, extracellular | 21.78 | 44.44 |
| CDX81680 | Canola | cytosol | 33.17 | 44.37 |
| CDY33731 | Canola | cytosol | 33.17 | 44.37 |
| CDY33732 | Canola | cytosol | 33.17 | 44.37 |
| CDY45296 | Canola | cytosol | 32.67 | 43.71 |
| CDX81682 | Canola | cytosol, plastid, vacuole | 27.72 | 38.1 |
| CDY29143 | Canola | cytosol | 28.22 | 38.0 |
| CDX81681 | Canola | cytosol, plasma membrane, plastid | 29.7 | 37.04 |
| CDX96001 | Canola | cytosol | 29.7 | 36.81 |
| CDY33730 | Canola | cytosol | 26.24 | 35.1 |
| CDY39895 | Canola | cytosol | 25.74 | 31.9 |
| CDY07373 | Canola | cytosol | 25.25 | 31.68 |
| CDY04241 | Canola | cytosol | 25.25 | 31.68 |
| CDY38607 | Canola | plasma membrane | 24.26 | 30.43 |
| CDX96000 | Canola | plasma membrane | 24.26 | 30.43 |
| VIT_14s0006g03190.t01 | Wine grape | cytosol, nucleus, plastid | 43.56 | 27.94 |
| VIT_17s0000g03960.t01 | Wine grape | cytosol, nucleus, plastid | 42.57 | 27.48 |
| CDY38687 | Canola | cytosol | 26.24 | 25.98 |
| CDY57571 | Canola | cytosol | 23.27 | 24.48 |
| CDY53672 | Canola | cytosol | 22.28 | 24.06 |
| CDY57415 | Canola | cytosol | 22.77 | 23.83 |
| CDY06953 | Canola | cytosol | 22.28 | 23.32 |
| Solyc03g119660.1.1 | Tomato | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 47.03 | 22.95 |
| PGSC0003DMT400014354 | Potato | cytosol, endoplasmic reticulum, nucleus | 47.03 | 22.2 |
Protein Annotations
| EnsemblPlants:CDY71552 | EnsemblPlantsGene:GSBRNA2T00017091001 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF49 | PFAM:PF04749 |
| ProteinID:CDY71552 | ProteinID:CDY71552.1 | TIGRFAMs:TIGR01571 | TMHMM:TMhelix | UniParc:UPI0004EF06E2 | UniProt:A0A078K0X3 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng73400DBnaCnng73400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0X3]
Coordinates
chrLK046341:-:421..1494
Molecular Weight (calculated)
22761.6 Da
IEP (calculated)
7.862
GRAVY (calculated)
-0.397
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRPDQTPSP RMHNNFNPMF HPHLHLNHRG VPNMPRPVQP TYINPGRMGN QPYIPPQMAR PVNINQNWTS GLFDCMNDGE NAIITCFFPF VTFGQIAEVT
101: DEGATSCGTG GMLYGLICCL FGIPCVYSCT FRAKIRSKFG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPAIGWSG NVQRQRQQQE MMAPPMGQRM
201: MG
101: DEGATSCGTG GMLYGLICCL FGIPCVYSCT FRAKIRSKFG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPAIGWSG NVQRQRQQQE MMAPPMGQRM
201: MG
001: MGRPDQTPSP RMNNNFNPVF HAQSEQPVDE KRVLQAEQIY PNNGGVVNQP NQVPMRPGPP TYINQSATFN QPYGVSMAGP VHTQPSNWTS GLFDCMNDGE
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
101: NALITCCFPF VTFGQIAEVI DEGATSCGTA GMLYGLICCL FAIPCVYTCT FRTKLRSKYG LPDAPAPDWI THCFCEYCAL CQEYRELKNR GLDPSIGWIG
201: NVQKQRMGQQ QEMMAPPMGQ RMMG
Arabidopsis Description
PCR6Protein PLANT CADMIUM RESISTANCE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9A5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.