CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06953	Canola	cytosol	98.96	98.96
Bra016960.1-P	Field mustard	cytosol	97.93	97.93
CDY57571	Canola	cytosol	96.37	96.88
AT2G40935.9	Thale cress	cytosol	82.38	83.68
CDY53672	Canola	cytosol	76.17	78.61
Solyc10g081410.1.1	Tomato	cytosol	59.59	61.17
PGSC0003DMT400072265	Potato	mitochondrion	59.07	60.64
VIT_08s0040g00140.t01	Wine grape	extracellular, plasma membrane, plastid	44.04	60.28
KRH77728	Soybean	extracellular	57.51	60.0
GSMUA_Achr6P32110_001	Banana	extracellular, peroxisome, plasma membrane	58.03	59.57
KRH27778	Soybean	extracellular, nucleus, plasma membrane	56.99	58.51
Zm00001d008282_P003	Maize	cytosol, extracellular, plasma membrane	53.37	55.98
HORVU3Hr1G037940.1	Barley	cytosol	53.37	55.98
TraesCS3A01G184200.2	Wheat	extracellular	52.85	55.43
TraesCS3D01G188300.1	Wheat	extracellular	52.85	55.43
TraesCS3B01G214000.1	Wheat	cytosol	52.85	55.43
EES02743	Sorghum	cytosol	52.33	55.19
GSMUA_Achr9P05180_001	Banana	endoplasmic reticulum, extracellular	42.49	53.59
Os01t0267400-01	Rice	cytosol, extracellular, plastid	38.86	51.02
CDY24480	Canola	cytosol, extracellular, vacuole	23.32	33.83
CDX92238	Canola	plasma membrane	23.32	33.83
CDY45296	Canola	cytosol	26.42	33.77
CDX81680	Canola	cytosol	26.42	33.77
CDY33731	Canola	cytosol	26.42	33.77
CDY51779	Canola	endoplasmic reticulum, extracellular	17.1	33.33
CDY33732	Canola	cytosol	25.91	33.11
CDY71864	Canola	cytosol	25.39	32.45
CDY29143	Canola	cytosol	24.35	31.33
CDX96001	Canola	cytosol	26.42	31.29
CDX81681	Canola	cytosol, plasma membrane, plastid	24.87	29.63
CDX81682	Canola	cytosol, plastid, vacuole	22.28	29.25
CDY07373	Canola	cytosol	24.35	29.19
CDY33730	Canola	cytosol	22.8	29.14
CDY04241	Canola	cytosol	23.83	28.57
CDY70500	Canola	cytosol	22.28	27.74
CDY39895	Canola	cytosol	23.32	27.61
CDY62851	Canola	cytosol, extracellular, plasma membrane	22.28	27.39
CDX96000	Canola	plasma membrane	22.8	27.33
CDY38607	Canola	plasma membrane	22.8	27.33
CDY48592	Canola	plastid	24.35	26.86
CDX92237	Canola	cytosol	22.28	24.86
CDY38687	Canola	cytosol	24.35	23.04
CDY71552	Canola	plastid	23.83	22.77
CDY62854	Canola	cytosol	24.87	22.02

Protein Annotations

EnsemblPlants:CDY57415	EnsemblPlantsGene:GSBRNA2T00020951001	InterPro:PLAC_motif_containing	PANTHER:PTHR15907	PFAM:PF04749	ProteinID:CDY57415
ProteinID:CDY57415.1	SEG:seg	TIGRFAMs:TIGR01571	UniParc:UPI0004EEE1E1	UniProt:A0A078J270	MapMan:35.1

Description

BnaC08g47450DBnaC08g47450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J270]

Coordinates

chrLK033573:-:2822..4012

Molecular Weight (calculated)

21211.2 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.106

Length

193 amino acids

Sequence
(BLAST)

001: MKEKGDYVRP RYIPLRESEE ADATEEEATT TPTSLEVAVS GETRDGPKQW SSGICACFDD IQSCFIGLFC PCYIFGKNAE LLGSGKFAGP CLTHCISWAL
101: VNTICCFATN GVLLGLPGCF VSCYACGYRR SLRTKYNLQE APCGDFVTHF FCHLCAICQE YREIRERSSG SSPTDMKMAV TDAPIAQTME PAN

Best Arabidopsis Sequence Match ( AT2G40935.8 )
(BLAST)

001: MKEKKGHYVP PSYIPLTQSD ADTEVETTTP NLEIAVSEST KDDPRQWSSG ICACFDDMQS CCVGLFCPCY IFGKNAELLG SGTFAGPCLT HCISWALVNT
101: ICCFATNGAL LGLPGCFVSC YACGYRKSLR AKYNLQEAPC GDFVTHFFCH LCAICQEYRE IREQSSGSYP LDMKMAITNA PLAQTMESAN

Arabidopsis Description

PCR10Protein PLANT CADMIUM RESISTANCE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.