Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026794.1-P | Field mustard | cytosol, plastid, vacuole | 97.96 | 97.96 |
| CDY33730 | Canola | cytosol | 74.83 | 72.85 |
| CDY33732 | Canola | cytosol | 70.75 | 68.87 |
| CDY71864 | Canola | cytosol | 70.07 | 68.21 |
| CDX81680 | Canola | cytosol | 69.39 | 67.55 |
| CDY45296 | Canola | cytosol | 69.39 | 67.55 |
| CDY33731 | Canola | cytosol | 69.39 | 67.55 |
| CDY51779 | Canola | endoplasmic reticulum, extracellular | 44.22 | 65.66 |
| CDX81681 | Canola | cytosol, plasma membrane, plastid | 70.07 | 63.58 |
| KRH47639 | Soybean | endoplasmic reticulum, extracellular | 36.05 | 57.61 |
| KRH41677 | Soybean | extracellular | 56.46 | 47.43 |
| KRH60380 | Soybean | plastid | 58.5 | 46.24 |
| KRH60379 | Soybean | cytosol, plastid, vacuole | 58.5 | 45.03 |
| CDX96001 | Canola | cytosol | 49.66 | 44.79 |
| Solyc04g007900.2.1 | Tomato | nucleus | 51.7 | 40.86 |
| CDX92238 | Canola | plasma membrane | 36.05 | 39.85 |
| PGSC0003DMT400075916 | Potato | cytosol, endoplasmic reticulum, nucleus | 51.02 | 39.47 |
| CDY24480 | Canola | cytosol, extracellular, vacuole | 35.37 | 39.1 |
| CDY29143 | Canola | cytosol | 39.46 | 38.67 |
| VIT_01s0011g05450.t01 | Wine grape | mitochondrion | 53.06 | 34.98 |
| CDY62851 | Canola | cytosol, extracellular, plasma membrane | 34.69 | 32.48 |
| CDY39895 | Canola | cytosol | 35.37 | 31.9 |
| CDX92237 | Canola | cytosol | 37.41 | 31.79 |
| CDY70500 | Canola | cytosol | 33.33 | 31.61 |
| CDY38607 | Canola | plasma membrane | 34.01 | 31.06 |
| CDX96000 | Canola | plasma membrane | 34.01 | 31.06 |
| CDY04241 | Canola | cytosol | 33.33 | 30.43 |
| CDY07373 | Canola | cytosol | 33.33 | 30.43 |
| CDY48592 | Canola | plastid | 36.05 | 30.29 |
| CDY71552 | Canola | plastid | 38.1 | 27.72 |
| CDY38687 | Canola | cytosol | 37.41 | 26.96 |
| CDY62854 | Canola | cytosol | 38.1 | 25.69 |
| CDY57571 | Canola | cytosol | 29.93 | 22.92 |
| CDY53672 | Canola | cytosol | 28.57 | 22.46 |
| CDY57415 | Canola | cytosol | 29.25 | 22.28 |
| CDY06953 | Canola | cytosol | 29.25 | 22.28 |
| Os02t0286933-00 | Rice | cytosol, nucleus, plastid | 5.44 | 7.21 |
Protein Annotations
| EnsemblPlants:CDX81682 | EnsemblPlantsGene:GSBRNA2T00136604001 | GO:A0A078CY10 | InterPro:PLAC_motif_containing | PANTHER:PTHR15907 | PANTHER:PTHR15907:SF92 |
| PFAM:PF04749 | ProteinID:CDX81682 | ProteinID:CDX81682.1 | SEG:seg | TIGRFAMs:TIGR01571 | TMHMM:TMhelix |
| UniParc:UPI0004EF4904 | MapMan:35.1 | : | : | : | : |
Description
BnaC08g39190D
Coordinates
chrLK031826:-:352322..353732
Molecular Weight (calculated)
16068.4 Da
IEP (calculated)
7.645
GRAVY (calculated)
0.024
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVQGKPQAE GEWSTGFCDF CSDCSICCLT CWCPCVTVGR IVEIVDKGST SCCAAGALYM LLTWFTGCGF IYSCHYRTKM RKQYNLKGSE CGDCFKHFCC
101: ERCALTQAYR ELTNRGFGVA LGWQGNAGHQ NAGVAMGAPV VQGGMMR
101: ERCALTQAYR ELTNRGFGVA LGWQGNAGHQ NAGVAMGAPV VQGGMMR
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
Arabidopsis Description
PCR2PCR2 [Source:UniProtKB/TrEMBL;Acc:A0A178WDU8]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.